PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G11130.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 464aa MW: 50366.5 Da PI: 7.8281

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G11130.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	84	144	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s OMERI01G11130.1 84 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVS 144 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	81	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-31	86	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MAMYQLCHQV MPNLGNGVKT NNDIPLVSDK LLTVKGIPFY PNNSKKNDLQ GISRPDGRIE 60 IDSMTEDVKT QPDGSVPEKI LKKPDKILPC PRCNSMETKF CYFNNYNVHQ PRHFCRNCQR 120 YWTAGGAMRN VPVGAGRRRN KHVSQYRQAM MTCNNTVAPG DVSDVVHHQV ITHGSSLLPA 180 TLKENETPTE FISEVPPCKF SASILDIGEP NDTDLVPLAS GDNKEEKSCA SSVVVSSCSE 240 NLMPDNAIMK EPNNRSGCCN GVALPFPTGP ALVLPWSLGW NSVALMPATQ CSTQPVLGLK 300 DGIPCPLSWP PQLMVPAPGI CTPVVPIPLV PPLWSCFPGW PNGMWNAQCP GGNSTVVPST 360 APNKISCSGS SSLVLGKHSR EESLQEEEKT RNNLWVPKTL RIDDPAEAAK SSIRATLGIK 420 PDDKGIFKSF QPNVAKNGTA PESPQALQAN PAAFSRSQSF QETT

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MAMYQLCHQV MPNLGNGVKT NNDIPLVSDK LLTVKGIPFY PNNSKKNDLQ GISRPDGRIE  60
IDSMTEDVKT QPDGSVPEKI LKKPDKILPC PRCNSMETKF CYFNNYNVHQ PRHFCRNCQR  120
YWTAGGAMRN VPVGAGRRRN KHVSQYRQAM MTCNNTVAPG DVSDVVHHQV ITHGSSLLPA  180
TLKENETPTE FISEVPPCKF SASILDIGEP NDTDLVPLAS GDNKEEKSCA SSVVVSSCSE  240
NLMPDNAIMK EPNNRSGCCN GVALPFPTGP ALVLPWSLGW NSVALMPATQ CSTQPVLGLK  300
DGIPCPLSWP PQLMVPAPGI CTPVVPIPLV PPLWSCFPGW PNGMWNAQCP GGNSTVVPST  360
APNKISCSGS SSLVLGKHSR EESLQEEEKT RNNLWVPKTL RIDDPAEAAK SSIRATLGIK  420
PDDKGIFKSF QPNVAKNGTA PESPQALQAN PAAFSRSQSF QETT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635234.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0C0Q0	0.0	A0A0E0C0Q0_9ORYZ; Uncharacterized protein
STRING	OMERI01G10990.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-60	cycling DOF factor 2