PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G12980.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 714aa    MW: 75367.8 Da    PI: 4.5202
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G12980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.77.2e-094271639
                     HHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF 16 RrngilKKAeELSvLCdaevavii 39
                     R+++++K A+ELSvLCd+ va++ 
  OMERI01G12980.1  4 RKETVIKMAKELSVLCDVPVALVC 27
                     9********************996 PP
2SRF-TF28.22.5e-093884131539
                      HHHHHHHHHH.HHHHHHHT-EEEEEE CS
           SRF-TF  15 kRrngilKKA.eELSvLCdaevavii 39 
                       R+++++K A +ELSvLCda+vav++
  OMERI01G12980.1 388 GRKETVMKMAkKELSVLCDAQVAVVV 413
                      478*******55************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.321126IPR002100Transcription factor, MADS-box
PfamPF003191.3E-5427IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-8465IPR002100Transcription factor, MADS-box
CDDcd002665.90E-15366450No hitNo description
SuperFamilySSF554551.44E-8369457IPR002100Transcription factor, MADS-box
PfamPF003199.6E-6374418IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MAGRKETVIK MAKELSVLCD VPVALVCAVG GAVEVWESEE GVLDRYRALP PEALAARAHT  60
HRGYLERELR ARRAKLARVR EEGAFKSWGR DALSGVTPEE APALLESIDA AIAAATARQE  120
ALALLDGGGL HVQHVPACAS DAAAPVVSDG VQVQYIGGGI PQEMTPAADG DGAHNADQYD  180
ILPWDGDTFE AHNADVMLPA CGFQCTGDYR VDMDGYVWEA PGDANADHGW PDQTMWCTDE  240
SCSCNAATAT AVPAMYPHTL DTVHGSFLAA PAQPLAFSTG ADFINAPNDF LTMGIGGSFI  300
NVGDYSAPSS ADEFHHLMSD ATNQLDQTHY PPFGGMAGAE PGDTQSQSWG DYYLAQSSAD  360
DPRIGTPMGL IPCPKKRAAT FARRKMAGRK ETVMKMAKKE LSVLCDAQVA VVVGDPGGGA  420
APMEAWESEE GVLDRYRALP PEVRAKRSLA HREYLREELR KQRAKLAKVR EEGAFKPWDD  480
ALDGFAEEET RKLHKYLSDK IEAARARMEA MGLQLGDVDD NGVNGDDGGG LDLQQHVPPS  540
ASDAKEFESV PVVHGGQYIG SSSGGGGGGG GDNQMQTTPA ADGICFAEQY VPHPWEWDGT  600
FPSQPQAVQP GHGIQNNAPM EGYPLQVPSN GLPDLATGTG CIAAAAAAAA ATTAAARYPP  660
TLDTGRHGSF LAAPRAQPLA FSTAGADFIN APNNFLTTGV SDYSAQSSGY GIGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0C1G70.0A0A0E0C1G7_9ORYZ; Uncharacterized protein
STRINGOMERI01G12550.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150691120