PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G15780.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 360aa MW: 39052.8 Da PI: 4.2485

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G15780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	8	29	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F+r+ nL +H t+ OMERI01G15780.1 8 PCQFCGKNFKRRGNLLNHELTC 29 6*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.6	7	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MASEWDSPCQ FCGKNFKRRG NLLNHELTCK YISGAHLQTE SAGDAQARKD ILGFHIPRQK 60 RTVPAFPASD YAQGGINGAT TSEVKVDRDP EEETDVLEAL LLLREQPAYP GEETFSDDEP 120 GAGNVDDEPA ASNPDKALTM CSDKGSSPVE CYGGDERMVN ARAIAGVEKD DLNPNVGCLG 180 VTDCVDESDV IQKQKRKPDL SVADLRDLVE MKQQNMKADT NIHDQGYPSV MQMQKNKLGL 240 DLLPHKNSSD HEVPTLSVSS TDDPDGLVST DTNSDKEMET VNVGIDNNIP EHRDSSVTQM 300 RSEKFGLNLL PPNDSSGHEV PTLSVSSTED LSSLAPADTS SDKDTNSNVA DSFGHYPAQE

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MASEWDSPCQ FCGKNFKRRG NLLNHELTCK YISGAHLQTE SAGDAQARKD ILGFHIPRQK  60
RTVPAFPASD YAQGGINGAT TSEVKVDRDP EEETDVLEAL LLLREQPAYP GEETFSDDEP  120
GAGNVDDEPA ASNPDKALTM CSDKGSSPVE CYGGDERMVN ARAIAGVEKD DLNPNVGCLG  180
VTDCVDESDV IQKQKRKPDL SVADLRDLVE MKQQNMKADT NIHDQGYPSV MQMQKNKLGL  240
DLLPHKNSSD HEVPTLSVSS TDDPDGLVST DTNSDKEMET VNVGIDNNIP EHRDSSVTQM  300
RSEKFGLNLL PPNDSSGHEV PTLSVSSTED LSSLAPADTS SDKDTNSNVA DSFGHYPAQE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619004.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619005.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619006.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619007.1	0.0	uncharacterized protein LOC4352628
TrEMBL	A0A0E0C2K7	0.0	A0A0E0C2K7_9ORYZ; Uncharacterized protein
STRING	OMERI01G15130.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15758	11	11