PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G15790.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 372aa    MW: 41143 Da    PI: 7.0231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G15790.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.3e-077192223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C+k+Fs++ +L+ H+++H
  OMERI01G15790.3 71 QCQMCSKVFSTSGSLREHMMMH 92
                     7*******************99 PP
2zf-C2H216.42.6e-05275297123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ CgksF +   L  H+r+H
  OMERI01G15790.3 275 HRCNTCGKSFGSGQALGGHMRRH 297
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.6E-101034IPR007087Zinc finger, C2H2
PROSITE profilePS501578.8711032IPR007087Zinc finger, C2H2
SMARTSM003550.571032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801132IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.577097IPR007087Zinc finger, C2H2
SMARTSM003553.3E-47092IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-77196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.95E-107192No hitNo description
PfamPF138944.6E-47192No hitNo description
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-10270297No hitNo description
PROSITE profilePS5015710.907275302IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-4275297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.4E-11275298IPR007087Zinc finger, C2H2
SMARTSM003550.0079275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRRVDNQPK STSSPPTVVD LHMPLLSSCD  60
DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD  120
VMVFSSVKRK RSFRSKRQTP ALNLEEIEAA DALLLLSGCF DKTSAYEDCY LGGIEDGSLG  180
SIVLTEVNMN ALDRCSIRSV DSKKPINDNN SAYKDFYGQS DKENCLTVPK EEMDLNDFDH  240
ELVRDAALRK PRTDNLDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR  300
KCNRHWGVAD RAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLWNAGQ  360
NEIPCPSYNL KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287740.0AL928774.3 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619008.10.0uncharacterized protein LOC4352630 isoform X1
TrEMBLA0A0E0C2L00.0A0A0E0C2L0_9ORYZ; Uncharacterized protein
STRINGOMERI01G15150.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.14e-08C2H2 family protein