PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G16690.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 181aa    MW: 18620.3 Da    PI: 7.9282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G16690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-063475954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     Er RR+ +   ++eL  llP++     ++ s   i+e+A+ ++ +L
  OMERI01G16690.1 34 ERARRQTMSRLYAELGALLPNL----PPRASTTRIVEEAIACVGEL 75
                     9********************6....389**********9887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6712575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-83085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-63383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-43378No hitNo description
Gene3DG3DSA:3.30.70.2603.0E-4125176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAEEDNLALS VVCERSPGTA AEAASGRPPK AGSERARRQT MSRLYAELGA LLPNLPPRAS  60
TTRIVEEAIA CVGELRAKTA ELEAYSAVAV AAAAAAGRAA RDGAAEVVAS GETSCFAVRL  120
RAARARPGAL TRVLEVFQRH GVAVLAATVA RDGEETAVTV TTAAVAPRVL ETIKAEIICA  180
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042221e-169AP004222.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1003B09.
GenBankAP0149571e-169AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-169CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878346.13e-85uncharacterized protein LOC112937659
TrEMBLA0A0E0C2Y81e-118A0A0E0C2Y8_9ORYZ; Uncharacterized protein
STRINGOMERI01G15970.11e-119(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.16e-08bHLH family protein