PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G18590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 401aa    MW: 43671.7 Da    PI: 6.7756
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G18590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.91.1e-31931872103
                      HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F+ k+ye++ d++++ ++sw    +g+sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF++  F +g+k+l
  OMERI01G18590.1  93 FVAKTYEMVADAATDAVVSWGpgGSGDSFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANGAFLAGQKHL 177
                      9********************65567******************************************99.........*************** PP

                      XXXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkkse 103
                      l++ikr++ +
  OMERI01G18590.1 178 LKNIKRRRVS 187
                      ******9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3389184IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.89E-3189184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5389184IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2893184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1793116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-17133145IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340134158IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-17146158IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MLKPPNTSRS PRRASHMASS SSSSLCRLLI PRPTTRRFSA GGGEGGGMAV AAAAPVKREV  60
KPEAEAGEGD DLGVVAPPPR PMEGLGEAGP APFVAKTYEM VADAATDAVV SWGPGGSGDS  120
FVVWDPHALA AGVLPRFFKH ANFSSFVRQL NTYGFRKVTP DRWEFANGAF LAGQKHLLKN  180
IKRRRVSKPL MDSQLRNKTS VVFGQPEAPG EVVSLKRDRA ALRAEVIMLK QQYNACKSQL  240
IAMEEMVCNI ERRQQQTISF FAKVLTNPVF VQQVLLNYVN KNGLRGAAKR QRLMENEEQH  300
AGSPLNKGME AASVMEADVS PGSTGCGTVG KVETTPMCNS QNIENMCDDV WEELDALPET  360
GMEQEDKAGI GSFDVEEFVG RPCGWVDDCP YLVEPMQFVE H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-238418417129Heat shock factor protein 1
5d5v_B6e-238418417129Heat shock factor protein 1
5d5v_D6e-238418417129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183LKNIKRR
2181185KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642710.0AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631502.10.0heat stress transcription factor A-6a
SwissprotQ657C00.0HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLA0A0E0C3Q50.0A0A0E0C3Q5_9ORYZ; Uncharacterized protein
STRINGOMERI01G17700.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-77heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]