PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G18610.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 529aa MW: 56453.9 Da PI: 7.9376

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G18610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H OMERI01G18610.1 88 FVCEICGKGFQRDQNLQLHRRGH 110 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.5E-7	87	110	No hit	No description
SMART	SM00355	0.012	88	110	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	88	110	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-5	88	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	130	160	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.5E-7	160	185	No hit	No description
SMART	SM00355	160	165	185	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MFHHHLQQQQ QQEEEGGLLL VEEAEAADQQ QESSMSNLTS SASAAPPPSS GNGNNNSNKR 60 KRSLPGNPDP EAEVVALSPA TLMATNRFVC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG 120 SKEAVRKKVY ICPEASCVHH DPSRALGDLT GIKKHFFRKH GEKKWKCDKC SKKYAVHSDW 180 KAHSKICGTR EYKCDCGTIF SRRDSFITHR AFCDALTEES AKAIGGIPAA MAAPGHHHHH 240 HHHQLLFSPP PVMAHHQELA ALQEQQQQHH QDFMQSPHQH QQQQQQLVQQ NCGYAVKPEM 300 APWPTTMPYD HHHPLLQPLC NANAAAAATA QSSATSAPPT TPQLPASAAA AHLSATALLQ 360 KAAQMGATIG GAGTGAAGAH YAHMASPAGA GAPTSAPAGG SATFGLGLSC LNTHQDGGGG 420 GNGLIPAGMM GHLARTASHG RSGEDVAGAG GAGDGMTRDF LGLRAFSHRD ILLAGFDSSC 480 MGHVNAAAGM ACYEPPPPHH GQPQPQHQQQ QQQQQGSSNE PWHGMGSHS

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MFHHHLQQQQ QQEEEGGLLL VEEAEAADQQ QESSMSNLTS SASAAPPPSS GNGNNNSNKR  60
KRSLPGNPDP EAEVVALSPA TLMATNRFVC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG  120
SKEAVRKKVY ICPEASCVHH DPSRALGDLT GIKKHFFRKH GEKKWKCDKC SKKYAVHSDW  180
KAHSKICGTR EYKCDCGTIF SRRDSFITHR AFCDALTEES AKAIGGIPAA MAAPGHHHHH  240
HHHQLLFSPP PVMAHHQELA ALQEQQQQHH QDFMQSPHQH QQQQQQLVQQ NCGYAVKPEM  300
APWPTTMPYD HHHPLLQPLC NANAAAAATA QSSATSAPPT TPQLPASAAA AHLSATALLQ  360
KAAQMGATIG GAGTGAAGAH YAHMASPAGA GAPTSAPAGG SATFGLGLSC LNTHQDGGGG  420
GNGLIPAGMM GHLARTASHG RSGEDVAGAG GAGDGMTRDF LGLRAFSHRD ILLAGFDSSC  480
MGHVNAAAGM ACYEPPPPHH GQPQPQHQQQ QQQQQGSSNE PWHGMGSHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	161	222	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-33	161	222	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	127	KLKQRGSKEAVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK289209	0.0	AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622202.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-117	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A0E0C3R3	0.0	A0A0E0C3R3_9ORYZ; Uncharacterized protein
STRING	ORUFI01G22710.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	9e-92	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]