PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G18670.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 125aa MW: 13234 Da PI: 7.0265

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G18670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.2	6.1e-34	9	111	1	100
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++++r +C+++C+lapyfpa++ ++f++++ lFG++ +l+ l+a+ ++ r++am+s+++ A+ara dPv+Ga+gvi++lqq+l+ +k OMERI01G18670.1 9 PCAACAHQGRpSCPAGCPLAPYFPADRLERFEYANLLFGVDGILRRLEAAgpDPGARRAAMASVAFVADARAADPVHGAYGVIRNLQQELAGVK 102 7*******9***********************************655666********************************** PP DUF260 92 aelallkee 100 ae+a+++++ OMERI01G18670.1 103 AEIAAIRQK 111 **99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.559	8	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-28	9	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MADPPHHPPC AACAHQGRPS CPAGCPLAPY FPADRLERFE YANLLFGVDG ILRRLEAAGP 60 DPGARRAAMA SVAFVADARA ADPVHGAYGV IRNLQQELAG VKAEIAAIRQ KQQQAQPPPP 120 PEDGH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-12	9	107	11	106	LOB family transfactor Ramosa2.1
5ly0_B	2e-12	9	107	11	106	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-173	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640499.1	2e-58	LOB domain-containing protein 22
TrEMBL	A0A0E0C3S1	8e-83	A0A0E0C3S1_9ORYZ; Uncharacterized protein
STRING	OMERI01G17780.1	1e-83	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15375	11	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-09	LOB domain-containing protein 27