PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G18730.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 449aa    MW: 46481.3 Da    PI: 5.2282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G18730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13264309555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f++Lr+llP++      K +K ++L  A +Y+ksL+
  OMERI01G18730.1 264 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 309
                      7789*********************9.....699***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-16258325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16264326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10264309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-12264312No hitNo description
SMARTSM003532.4E-12265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFDELMAG  60
GSSGDTRMVA MDDGDDGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD  120
AAAALAMSTL AVPQPYPPPP PVAHGMFASG AGGGADDHED AIMRAMMAVI SSASASPSSS  180
GGSASSPTPF SRDSGAHHQP AGQPAMAAPP QPRGGNGGHV VVKSSSSSGG LAVPMDQKPG  240
GGGRGRQQEE ASAASATNSS QLYHMMSERK RREKLNDSFH TLRSLLPPCS KKDKTTVLIN  300
AAKYLKSLET EITELEGTNT KLEKHIAGGG GAAVAAMRAR RAQQRAKVQI SKAADSQQLV  360
NLTVMVMVEC DVVELVLHIL ECLRWMKEIS VLSVYADTYS PQLLLKAIAN IKLQIMGGDW  420
NEASFHEAMT KAANDATISC APLAITAAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267272ERKRRE
2268273RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063330.0AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630527.10.0putative transcription factor bHLH041
TrEMBLA0A0E0C3T10.0A0A0E0C3T1_9ORYZ; Uncharacterized protein
STRINGOMERI01G17850.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-21bHLH family protein