PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G18770.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 518aa MW: 56588.5 Da PI: 6.9319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G18770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.2e-13	354	400	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N+ f L++l+P+ + K++Ka+iL +++ Y+k+L+ OMERI01G18770.1 354 NHVLSERRRREKLNEMFLDLKSLVPSiN------KVDKASILAETIAYLKELE 400 79999*******************77......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.3E-27	20	164	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.942	350	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.53E-15	353	404	No hit	No description
SuperFamily	SSF47459	1.83E-17	354	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	354	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-17	354	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-15	356	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009957	Biological Process	epidermal cell fate specification
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MASAPSAQEE PLQPGTMQFR KQLAAAVRSI SWTYAIFWSI STTRPGVLTW NDGFYNGEIK 60 TRKIGSSTME LTADQLLLQR SEQLRELYSS LLSGKCANQQ RRRRPITALS PEDLGNMECF 120 ASNGCAWLCN AQSADSKAFP RKLLAKTIVC VPLMNGVLEL GTTDPTFTYI SKGFGGTKCG 180 KPNHHGFLEL QLPACSDEPI SSGTPSSPSS PMKETGDANT VLIDDLFHSA AAIEHDTIVP 240 AAAGEDDHLG GDDAGGNLGQ QLPMEMEIDE MIYSLLDDDD VLLRSDVGLD HAVVVVSPAS 300 CFVPWKRTDL DKVVVAAGAS RESQRLLRKA VDGGAWKNSN GRTTTAAGSC SIKNHVLSER 360 RRREKLNEMF LDLKSLVPSI NKVDKASILA ETIAYLKELE RRVQELESGK KVSRPVKRKP 420 FSETITGVGA GAGAGPEKEH HHWVLSQCQE GNPSDVRVIV MDKDELHLEV HCRWKELLMT 480 RVFDAIKSLR LDVLSVQASA PDGLLGLKIR AKVVSLTR

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MASAPSAQEE PLQPGTMQFR KQLAAAVRSI SWTYAIFWSI STTRPGVLTW NDGFYNGEIK  60
TRKIGSSTME LTADQLLLQR SEQLRELYSS LLSGKCANQQ RRRRPITALS PEDLGNMECF  120
ASNGCAWLCN AQSADSKAFP RKLLAKTIVC VPLMNGVLEL GTTDPTFTYI SKGFGGTKCG  180
KPNHHGFLEL QLPACSDEPI SSGTPSSPSS PMKETGDANT VLIDDLFHSA AAIEHDTIVP  240
AAAGEDDHLG GDDAGGNLGQ QLPMEMEIDE MIYSLLDDDD VLLRSDVGLD HAVVVVSPAS  300
CFVPWKRTDL DKVVVAAGAS RESQRLLRKA VDGGAWKNSN GRTTTAAGSC SIKNHVLSER  360
RRREKLNEMF LDLKSLVPSI NKVDKASILA ETIAYLKELE RRVQELESGK KVSRPVKRKP  420
FSETITGVGA GAGAGPEKEH HHWVLSQCQE GNPSDVRVIV MDKDELHLEV HCRWKELLMT  480
RVFDAIKSLR LDVLSVQASA PDGLLGLKIR AKVVSLTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	363	ERRRRE
2	359	364	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002908	1e-151	AP002908.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013G02.
GenBank	AP003310	1e-151	AP003310.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F12.
GenBank	AP014957	1e-151	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638330.1	0.0	anthocyanin regulatory R-S protein
Swissprot	P13526	1e-116	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A0E0C3T5	0.0	A0A0E0C3T5_9ORYZ; Uncharacterized protein
STRING	OMERI01G17890.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	2e-31	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]