PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G19150.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 815aa    MW: 85962.4 Da    PI: 6.074
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G19150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.23.5e-28202261159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++tY g Hnh+
  OMERI01G19150.1 202 VKDGCQWRKYGQKTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTTYDGVHNHP 261
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-29190261IPR003657WRKY domain
SuperFamilySSF1182901.57E-25195262IPR003657WRKY domain
PROSITE profilePS5081127.209197263IPR003657WRKY domain
SMARTSM007748.9E-35202262IPR003657WRKY domain
PfamPF031061.6E-24203261IPR003657WRKY domain
PROSITE profilePS5137110.631413479IPR000644CBS domain
PfamPF005710.0012414473IPR000644CBS domain
SuperFamilySSF546311.11E-19414485No hitNo description
Gene3DG3DSA:3.10.580.102.9E-12415478No hitNo description
SMARTSM001160.001418474IPR000644CBS domain
CDDcd022053.95E-6418485No hitNo description
SuperFamilySSF546311.11E-19550626No hitNo description
Gene3DG3DSA:3.10.580.102.9E-12562626No hitNo description
PROSITE profilePS513717.501575634IPR000644CBS domain
CDDcd022057.78E-12577699No hitNo description
SMARTSM001169.9578627IPR000644CBS domain
SuperFamilySSF546312.24E-27646794No hitNo description
PROSITE profilePS5137112.145651709IPR000644CBS domain
CDDcd046426.44E-46654784No hitNo description
PfamPF005712.0E-7655704IPR000644CBS domain
Gene3DG3DSA:3.10.580.101.8E-23655785No hitNo description
SMARTSM001162.9E-8655704IPR000644CBS domain
PROSITE profilePS5137111.358735791IPR000644CBS domain
PfamPF005715.4E-10737783IPR000644CBS domain
SMARTSM001168.3E-8738786IPR000644CBS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MNTFAFLRDE VQKASEKVHR HHANDDEAGL FLSLGLSLGS SPADTGHASK KDEADAGDGG  60
YLALALRCDP AAGEPIVHRH HANDDEAGLF LSLGLSLGSS PADTGHASKK DEADAGDGGY  120
LALALRCDPA AGEPIVHPKR QRTTTNSSSS SSICGEYGDG GAAAALPGGH DDDDRSCMIT  180
AASTANRPGR VVLRTRCSAP TVKDGCQWRK YGQKTAKGNP WPRGYYRCTG APGCPVKKQV  240
QRCNHDTSVL VTTYDGVHNH PITPYAAALP PSSSSSSAAA AAAMLASSSS SSSTLSGLQR  300
AMSSSIIAMP AAQSSWSQRN YPIQADVVAK AIWDPKFQAT VAAAVASYVR DREQSVAALP  360
VGRVPESSST WLLHADNCDA YFDTIQSKKK LPFSLQESLT AAFAQIPVSS FPDVPNGRVI  420
EIPGDTSVLD AVRILSEHNI RAAPVLNPEC GAPADWKGRY LGIIDYSAII LWVLENAEIA  480
AVALSAGSAT AAGVGMGAVG AVGVAALGVT APAAVAGLTA AAVGAAVAGE LTAEKGVAKD  540
GLTAADHLGE DFYKVLLQQE PFKSTTVRSI VESYRWSPFV PITLDTSMLT VLLLLSKYRL  600
RNVPVIEPDK PIIKNFITQT GVVKGLQQCK GRDWFDYISA LPLSDLGLPF MSLDEVITVN  660
SGDLILEAFK CMKDNKIGGV PVVEGPNRKL VGSVSIRDIR FLLLRPDLFS NFRQLTVMEF  720
MKTIGSTVPD SGNGLVKPPL TCSPDASLGS VIDSIASRIT HRIYVVDGDF EVVGVVTLRD  780
VISCFIYEPP GYCDNYLASA MDKLEEKGAG SVDTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-25190264275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0696980.0AK069698.1 Oryza sativa Japonica Group cDNA clone:J023027C14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610598.10.0SNF1-related protein kinase regulatory subunit gamma-1-like
RefseqXP_015611245.10.0SNF1-related protein kinase regulatory subunit gamma-1-like
SwissprotQ9CAR31e-166KINGL_ARATH; SNF1-related protein kinase regulatory subunit gamma-1-like
TrEMBLA0A0E0C3Y10.0A0A0E0C3Y1_9ORYZ; Uncharacterized protein
STRINGOMERI01G18210.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP925023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.15e-37WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Jeong BC,Yoo KS,Jung KW,Shin JS,Song HK
    Purification, crystallization and preliminary X-ray diffraction analysis of a cystathionine beta-synthase domain-containing protein, CDCP2, from Arabidopsis thaliana.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2008. 64(Pt 9): p. 825-7
    [PMID:18765915]
  2. Kushwaha HR,Singh AK,Sopory SK,Singla-Pareek SL,Pareek A
    Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation.
    BMC Genomics, 2009. 10: p. 200
    [PMID:19400948]