PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G20790.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1447aa MW: 150136 Da PI: 3.7015

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G20790.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.3	3.9e-11	1372	1396	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ OMERI01G20790.2 1372 CGSCRILLAYFRGAGYVHCTCCQTM 1396 ***********************96 PP
2	zf-LSD1	40.5	4.6e-13	1410	1434	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V OMERI01G20790.2 1410 CGHCATLLMYPFGAPAVKCSLCLFV 1434 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-10	1369	1399	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-7	1372	1395	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.5E-8	1408	1435	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.5E-10	1410	1434	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1447 aa Download sequence Send to blast
MASSPETAKP LESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP 60 GQATEGWPRA EEPQPPIDGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP 120 SPRPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPA 180 RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASP AREPMGSHTA PEPPTPPLES 240 GQEGFQQQQP HPQPTTHPEC DSSEPAEPLL PPTSPAEIAH TSPDSAEVDV VAVSPEEAPG 300 STAAMEVMYG ETDASAVSVS PVLGSVETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA 360 AVSVSPVLES REPDAAEVDV VAGVQEEAHG SKFSMEVTYR ETDAAAVSVS PVLGSGEPDK 420 AEIDVVEEMQ EEAHASRFAM EAMYEEPDAS AVSVSPVLES VEPDVTEIDV VSEMQEEEAP 480 DSTLAMEVTS GETDTAAVSA FPVLDGGDPD AAEKNVVAGM QEEEAPDSTL AIEVTSGETD 540 TAAVSVSPVL EGVDPDAAEI DVVAGMQEEA PGSTLAMEVT YRETDATAAS VSTVLDSRDP 600 DAAEVDVVVG MQEQAAGSAL AMLVTYGETD TSAVSVSPVL ESGEPDAAQI DVVAGMQEEA 660 PGSTLAMEVT YREVDAATVS VSLVLESVEP DAAKIDVVAR IQEEAPGSKL AMEVMYGETG 720 TAAVSVPLVL ESGEEGSLQE SMQRPSSPTM NIEQESMQRP FSPTIGIETS SPEMAPAGSE 780 NCKVSWLPLP PPTPLGESMP SLPVAAAPKV LLVMPEEAVE SVPSSEALDA EKPASITQAE 840 PSSPNTPPPG FENFKSSWLP LPTTPPPVET TDVLPDVVVT KAMEAPIEEV SRPLPALEVT 900 NMESDTVLSI LPTTVLPTEG TEGLLQQPLL RPPSPVVQSE PCLQNEMAPP GFENFKSSCS 960 AEEIAPPGSD NFKSSSEPCS PEEMAPPGFE NFKSSSEPCS QEEMAPPGFE NFKSSWPPLP 1020 TLPQTVPDAA AADALAATVE EAAGPPPALE LEAMDVDMDA IHPPPLPFDS GVESSQKPLP 1080 RAPSPIMQEA PCSPDRAPPG FETYKSSQLL LPSPSLAQTT NVRQDQSVTE PVSVIEEAPQ 1140 PLHSVEVMGA HMDAVPPLLP SFESGEDGLS PQQFAQPPPA EKDTTTCLPD MVHSGCDNSE 1200 PSQLLSLPAV ISPVQTPDGL ADVPAIDRVA MALEESPQRP LVSGEMEAGT VPIQSSPLKN 1260 VSEGSLPQLE SESHSPTSQA ADSLLDASDS KSVAVASEEM SQLPLASQAT TTDLDSTTAM 1320 QPQSEGIVDE SLQPQHPPSS TAHDSPCLQN SVPLVPPPPS PYLNKEVGQM VCGSCRILLA 1380 YFRGAGYVHC TCCQTMNYVL EAHEVGKVHC GHCATLLMYP FGAPAVKCSL CLFVTEIGER 1440 NVRRRLA

Sequence ? help Back to Top

Protein Sequence Length: 1447 aa Download sequence Send to blast

MASSPETAKP LESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP  60
GQATEGWPRA EEPQPPIDGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP  120
SPRPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPA  180
RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASP AREPMGSHTA PEPPTPPLES  240
GQEGFQQQQP HPQPTTHPEC DSSEPAEPLL PPTSPAEIAH TSPDSAEVDV VAVSPEEAPG  300
STAAMEVMYG ETDASAVSVS PVLGSVETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA  360
AVSVSPVLES REPDAAEVDV VAGVQEEAHG SKFSMEVTYR ETDAAAVSVS PVLGSGEPDK  420
AEIDVVEEMQ EEAHASRFAM EAMYEEPDAS AVSVSPVLES VEPDVTEIDV VSEMQEEEAP  480
DSTLAMEVTS GETDTAAVSA FPVLDGGDPD AAEKNVVAGM QEEEAPDSTL AIEVTSGETD  540
TAAVSVSPVL EGVDPDAAEI DVVAGMQEEA PGSTLAMEVT YRETDATAAS VSTVLDSRDP  600
DAAEVDVVVG MQEQAAGSAL AMLVTYGETD TSAVSVSPVL ESGEPDAAQI DVVAGMQEEA  660
PGSTLAMEVT YREVDAATVS VSLVLESVEP DAAKIDVVAR IQEEAPGSKL AMEVMYGETG  720
TAAVSVPLVL ESGEEGSLQE SMQRPSSPTM NIEQESMQRP FSPTIGIETS SPEMAPAGSE  780
NCKVSWLPLP PPTPLGESMP SLPVAAAPKV LLVMPEEAVE SVPSSEALDA EKPASITQAE  840
PSSPNTPPPG FENFKSSWLP LPTTPPPVET TDVLPDVVVT KAMEAPIEEV SRPLPALEVT  900
NMESDTVLSI LPTTVLPTEG TEGLLQQPLL RPPSPVVQSE PCLQNEMAPP GFENFKSSCS  960
AEEIAPPGSD NFKSSSEPCS PEEMAPPGFE NFKSSSEPCS QEEMAPPGFE NFKSSWPPLP  1020
TLPQTVPDAA AADALAATVE EAAGPPPALE LEAMDVDMDA IHPPPLPFDS GVESSQKPLP  1080
RAPSPIMQEA PCSPDRAPPG FETYKSSQLL LPSPSLAQTT NVRQDQSVTE PVSVIEEAPQ  1140
PLHSVEVMGA HMDAVPPLLP SFESGEDGLS PQQFAQPPPA EKDTTTCLPD MVHSGCDNSE  1200
PSQLLSLPAV ISPVQTPDGL ADVPAIDRVA MALEESPQRP LVSGEMEAGT VPIQSSPLKN  1260
VSEGSLPQLE SESHSPTSQA ADSLLDASDS KSVAVASEEM SQLPLASQAT TTDLDSTTAM  1320
QPQSEGIVDE SLQPQHPPSS TAHDSPCLQN SVPLVPPPPS PYLNKEVGQM VCGSCRILLA  1380
YFRGAGYVHC TCCQTMNYVL EAHEVGKVHC GHCATLLMYP FGAPAVKCSL CLFVTEIGER  1440
NVRRRLA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002866	0.0	AP002866.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0410E01.
GenBank	AP003314	0.0	AP003314.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046B10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A0A0E0C4L4	0.0	A0A0E0C4L4_9ORYZ; Uncharacterized protein
STRING	OMERI01G19810.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-29	lsd one like 2