PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G20860.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 435aa    MW: 47350.8 Da    PI: 7.4023
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G20860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345e-11101126227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C f++ t tCk+G++CkF H++
  OMERI01G20860.1 101 GEKDCAFYMMTRTCKFGGSCKFDHPQ 126
                      7889********************97 PP
2zf-CCCH40.64.1e-13151176227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+ff++tG Ck+G++CkF+H++
  OMERI01G20860.1 151 GEPDCPFFMKTGKCKFGSKCKFNHPK 176
                      789*********************96 PP
3zf-CCCH21.15.6e-07190209827
                      GGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                      f+a+tG Ck+ + CkF+H++
  OMERI01G20860.1 190 FYAKTGKCKFRAMCKFNHPK 209
                      9*****************96 PP
4zf-CCCH39.96.8e-13262287126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+f++++G Ck+G++C+F+H+
  OMERI01G20860.1 262 PGEVDCPFYMKMGSCKFGSTCRFNHP 287
                      57899********************9 PP
5zf-CCCH36.21e-11345366526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+f+++tG+Ck+ drCkF+H+
  OMERI01G20860.1 345 VCDFYMKTGFCKFADRCKFHHP 366
                      7********************8 PP
6zf-CCCH33.95.2e-11400422527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C f+++tG Ck+G +CkF H+p
  OMERI01G20860.1 400 VCAFYMKTGVCKFGMQCKFDHPP 422
                      7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.61599127IPR000571Zinc finger, CCCH-type
SMARTSM003560.003899126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5100126IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8101126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258149177IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6149176IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10151176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6154179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5155176IPR000571Zinc finger, CCCH-type
SMARTSM003561.2186209IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.643190210IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563261289IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10263287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5265288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-7339368IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859340368IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8344366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6345366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408395423IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5395422IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6398423IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8399422IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4400420IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSDPGGAAGG EGAAAAGYSS YEVDLIAARY GGRPLANPSS AAADLDARLA GARRSMGVLY  60
HQPIMGSHST VEQIEALYSS NTMTKRPRLE SSLPIYPQRP GEKDCAFYMM TRTCKFGGSC  120
KFDHPQWVPE GGIPNWKEAA NVEESYPEQQ GEPDCPFFMK TGKCKFGSKC KFNHPKEKVN  180
ASASGKTNDF YAKTGKCKFR AMCKFNHPKD IEIPSSQNEP ESAVTVEGET DIGSAADSVS  240
VKMQTPVAAA QEFNSKGLPM RPGEVDCPFY MKMGSCKFGS TCRFNHPDHL VLNFPLPLGQ  300
TILPTLESML LNPSANFMQG FDFHAAHIPV GPGPVTYPQR PGATVCDFYM KTGFCKFADR  360
CKFHHPIDRS APDPSANWEP AEESVQLTLA GLPRREDAVV CAFYMKTGVC KFGMQCKFDH  420
PPPQEAIAKV SNSGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116820.0AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence.
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622283.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0E0C4M80.0A0A0E0C4M8_9ORYZ; Uncharacterized protein
STRINGOMERI01G19870.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-135floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]