PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G21040.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 106aa MW: 11917.3 Da PI: 6.5164

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G21040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	8.1e-09	62	94	4	39
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +T+eE++ + +++ G++ W++Ia +++ gRt+ + OMERI01G21040.1 62 FTEEEEDTVFRMHRLVGNR-WELIAGRIP-GRTA-E 94 9****************.*****.*9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.06E-6	50	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.269	54	106	IPR017930	Myb domain
SMART	SM00717	2.4E-4	58	106	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-10	61	99	IPR009057	Homeodomain-like
CDD	cd00167	5.63E-7	62	99	No hit	No description
Pfam	PF00249	8.0E-8	62	99	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010026	Biological Process	trichome differentiation
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0048765	Biological Process	root hair cell differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MESSSGSQLG KNSKTSDGRE TKATSSLLLL ITAIHFVALC PKGENEDARK EVNSTAQNFV 60 HFTEEEEDTV FRMHRLVGNR WELIAGRIPG RTAEVEKFWA IKHQDT

Functional Description ? help Back to Top
Source	Description
UniProt	MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269\|PubMed:22168948}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833447	4e-49	CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644376.1	2e-37	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Refseq	XP_006644377.1	2e-37	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Refseq	XP_015697875.1	2e-37	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Swissprot	B3H4X8	4e-17	TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBL	A0A0E0C4Q1	8e-73	A0A0E0C4Q1_9ORYZ; Uncharacterized protein
STRING	OMERI01G20100.1	1e-73	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5275	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01060.2	5e-20	CAPRICE-like MYB3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang M,Hu Y,Liu X,Li Y,Hou X Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development. Front Plant Sci, 2015. 6: p. 955 [PMID:26579186]