PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G21960.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 90aa    MW: 9875.82 Da    PI: 8.9446
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G21960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-101662346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT++  +++ +a + + ++   +W+ +ar+mg ++++++++ ++  
  OMERI01G21960.1 16 EWTKQQNKQFERALAVYDTDapdRWHNVARYMGGTKSAEEVRRHYER 62
                     7*******************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9431268IPR017884SANT domain
SMARTSM007171.8E-81366IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-111569IPR009057Homeodomain-like
CDDcd001671.76E-71663No hitNo description
PfamPF002493.2E-81663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-51670IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSKASSA SAASSEWTKQ QNKQFERALA VYDTDAPDRW HNVARYMGGT KSAEEVRRHY  60
ERLQADVEQI EAGGVPFSLG YGATPPAGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-20877270RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043171e-134AP004317.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0663E10.
GenBankAP0072511e-134AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14.
GenBankAP0149571e-134AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-134CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638756.13e-49protein RADIALIS-like 3
SwissprotQ1A1733e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0E0C5431e-59A0A0E0C543_9ORYZ; Uncharacterized protein
STRINGOMERI01G21040.12e-60(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-24RAD-like 6