PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G22060.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 228aa    MW: 25508.5 Da    PI: 6.5152
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G22060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv ++ q G g+W+  ar  g++R +k+c++rw++yl
  OMERI01G22060.1 16 KGPWTLEEDLILVSYISQNGEGSWDNLARSAGLNRNGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding51.91.7e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eEd  + +++ ++G++ W++Ia++++ gRt++++k++w++
  OMERI01G22060.1  69 RGSITPEEDMVIRELHSRWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112
                      7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3471163IPR017930Myb domain
SuperFamilySSF466897.99E-3114110IPR009057Homeodomain-like
SMARTSM007174.2E-131565IPR001005SANT/Myb domain
PfamPF002491.2E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-201769IPR009057Homeodomain-like
CDDcd001671.62E-91863No hitNo description
PROSITE profilePS5129424.3664118IPR017930Myb domain
SMARTSM007171.3E-1568116IPR001005SANT/Myb domain
PfamPF002495.0E-1569112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2470117IPR009057Homeodomain-like
CDDcd001674.63E-1273112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MATRMCGRAG EPAVRKGPWT LEEDLILVSY ISQNGEGSWD NLARSAGLNR NGKSCRLRWL  60
NYLRPGVRRG SITPEEDMVI RELHSRWGNR WSKIAKHLPG RTDNEIKNYW RTKIHRKPRG  120
RSQLLQEPCE DAMGMGMSTT TSEAASTSAS SGQSQASPGV WDEYMQASSF PHPELVSFAA  180
DHHLEMAGTD EVAAAAAAQF VPTEFGFNDG FWNFVDNFWE TMPVSDVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271211723127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036070.0AP003607.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0004A09.
GenBankAP0043670.0AP004367.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0696E01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642897.11e-170myb-related protein 305
TrEMBLA0A0E0C5551e-170A0A0E0C555_9ORYZ; Uncharacterized protein
STRINGORUFI01G26910.11e-169(Oryza rufipogon)
STRINGOS01T0637800-001e-169(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-58myb domain protein 21