PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23200.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 241aa    MW: 24781.7 Da    PI: 6.9322
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20123157135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  OMERI01G23200.1 123 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 157
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-15116158No hitNo description
Gene3DG3DSA:3.30.50.101.6E-17117157IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011414.404117153IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-21117174IPR000679Zinc finger, GATA-type
CDDcd002021.28E-13122154No hitNo description
PROSITE patternPS003440123148IPR000679Zinc finger, GATA-type
PfamPF003205.4E-18123157IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFPAGAP GDHHHHYYKQ YCGAGDGEYP DVPYGGGGSV  60
DCTLSLGTPS TRRAEAAVAG LPWDQSSLQP SCNGRQEMSG AAAPRTEPSG GAGAAAASAP  120
RRCANCDTTS TPLWRNGPRG PKSLCNACGI RYKKEERRAA AAAVAPAALA SDGGVEYAYG  180
YPRQQQQWGC YGPAVAKAAS FGMFGDAAGE DGPCLPWGLG VMPSSPAFGA VREMPSLFQY  240
Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032840.0AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638887.11e-149GATA transcription factor 20
TrEMBLA0A0E0C5M81e-172A0A0E0C5M8_9ORYZ; Uncharacterized protein
STRINGOMERI01G22380.11e-173(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-27GATA transcription factor 20