PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G23890.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 173aa MW: 17188.1 Da PI: 10.429

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G23890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	91.8	5.7e-29	81	135	5	58
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 l+cprC s++tkfCy+nny++ qPr++C++CrryWt+GGalr v + grr+ OMERI01G23890.1 81 PLPCPRCGSRETKFCYFNNYNVRQPRHLCRSCRRYWTAGGALRRVASASpGRRRP 135 689*****************************************98766255544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-20	80	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-26	81	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.583	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MANLPSTAAA ADASGFKLFG KVIQPDGQRG VEESAAAQAP PHPHPPAPPV MEAAAAVGTS 60 QTLQAAGGGG GGGGGGGGGE PLPCPRCGSR ETKFCYFNNY NVRQPRHLCR SCRRYWTAGG 120 ALRRVASASP GRRRPRPSAA RSAAAAAASA SAASPPAAVP AASEGAESVD SRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003223	0.0	AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBank	AP003264	0.0	AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619286.1	2e-53	dof zinc finger protein 5-like
TrEMBL	A0A0E0C5X7	1e-116	A0A0E0C5X7_9ORYZ; Uncharacterized protein
STRING	OMERI01G23060.1	1e-117	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	7e-22	Dof family protein