PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23900.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 335aa    MW: 36174.6 Da    PI: 10.1778
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1318104186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         s++ ++++l+
  OMERI01G23900.1  18 CWSDGETAALVDAWGRRYVDLNRGSLRQPQWREVAEAVnarpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTP------SSWYFYRDLD 104
                      7*******************************************999999********************9998775......4588888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2516105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDGKPPPPNP NLPYREDCWS DGETAALVDA WGRRYVDLNR GSLRQPQWRE VAEAVNARPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWYFY RDLDMLVGPT LSAAAAAGGG  120
GGGGSAKKPS PPRGLPMMRR RLESPSRSPS PPSPTPAVAL PLPNYRQASN LPSAGLLFNK  180
MAAAAAAESD SEDGYNIPNN NYEDDEDDGS QQSASRSVSS RSGGVAAAGA GGGGVSSSKR  240
KRGGGGGGGF GELARAVETF AEMYERMEFA KQRHAEEMER QRIKFLKDLE LKRMQAFVDV  300
QLQLAKAKHR KHPDGASEML MSLAALPFLS TPAYL
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0993960.0AK099396.1 Oryza sativa Japonica Group cDNA clone:J013000M14, full insert sequence.
GenBankAP0032640.0AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614545.11e-175trihelix transcription factor ASIL2
SwissprotQ9LJG82e-31ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0E0C5X80.0A0A0E0C5X8_9ORYZ; Uncharacterized protein
STRINGOMERI01G23090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-27sequence-specific DNA binding transcription factors