PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G24530.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 137aa    MW: 15142 Da    PI: 8.5993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G24530.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH504.7e-166388126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     +ktelC+ + +tG C+yGd+C+FaHg
  OMERI01G24530.2 63 FKTELCNKWEETGDCPYGDQCQFAHG 88
                     79***********************9 PP
2zf-CCCH20.67.7e-07101126126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+ Cr  +++  C+yG rC+F H+
  OMERI01G24530.2 101 YKTAVCRMVLAGDVCPYGHRCHFRHS 126
                      9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-195795IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-115994IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-96289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4136290IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-136388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-996128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-1296127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094100128IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5100127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MNQQSQAATA TPAAPNRKPR TSSNPTNPPS SQRAYDGGKK GDEQKAQPAD GGAELEVYNQ  60
GMFKTELCNK WEETGDCPYG DQCQFAHGVA ELRPVIRHPR YKTAVCRMVL AGDVCPYGHR  120
CHFRHSLSPA ERLLLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-2263126467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086580.0AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631641.17e-88zinc finger CCCH domain-containing protein 9 isoform X1
SwissprotA2ZVY56e-89C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A0E0C6811e-99A0A0E0C681_9ORYZ; Uncharacterized protein
STRINGOMERI01G23770.11e-100(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.17e-49C3H family protein