PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G25860.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 656aa MW: 73753.4 Da PI: 5.8499

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G25860.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	124.7	1.2e-38	40	113	3	76
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 ++r + +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+ OMERI01G25860.1 40 GRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSSSSSS 113 57888899************************************************************777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.0E-37	41	169	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.49E-188	203	643	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.1E-206	206	641	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.4E-114	212	630	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.0E-77	243	257	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.0E-77	264	282	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.0E-77	286	307	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	290	298	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	1.3E-8	369	378	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	8.0E-77	379	401	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.0E-77	452	471	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.0E-77	486	502	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.0E-77	503	514	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.0E-77	521	544	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.3E-8	524	534	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	8.0E-77	561	583	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.3E-8	612	626	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	1.3E-8	627	641	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MEEDGVKEEE EDYYLEEEDE GEEEPRPPLQ QQQQVGVGLG RRGRAREEKE RTKLRERQRR 60 AITARILAGL RRHGNYNLRV RADINEVIAA LAREAGWVVL PDGTTFPSSS SSSVSQPPPT 120 HQQLQPGRPS IAAPPLPSSP APPLRGISIS PVAARPISSL RSSSSIRIIS PPHALPDPLL 180 SLPSMDTQEV PDLLPPRPPE RDFAGTPYVP VYVMLPLGVV NGNGEVVDAD VLVGQLRVLK 240 AAGVDGVMVD CWWGNVEAHR PQEYNWTGYK RLFHMIRELK LKLQVVMSFH ECGGNVGDDV 300 SIPLPHWVTE IGRSNPDIYF TDRAGRRNTE CLSWGIDKER VLQGRTGVEV YFDYMRSFRV 360 EFDEYFEDGI ISEIEIGLGA CGELRYPSYP AKHGWKYPGI GEFQCYDRYL QKSLRRAAEA 420 RGHTIWARAP DSAGHYNSEP NLTGFFCDGG DYDSYYGRFF LNWYSQVLVD HADRVLMLAR 480 LAFEGSDIAV KVSGVHWWYK TASHAAELTA GFYNPCNRDG YASIAAVLKK HGAALNFTCV 540 ELRTMDQHEV FPEAFADPEG LVWQVLNAAW DAGIPVASEN ALPCYDRDGF NKILENAKPL 600 NDPDGRHLLG FTYLRLTKVL FERANFLEFE RFVKRMHGEA VLDLQCLSIQ VGHKKM

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MEEDGVKEEE EDYYLEEEDE GEEEPRPPLQ QQQQVGVGLG RRGRAREEKE RTKLRERQRR  60
AITARILAGL RRHGNYNLRV RADINEVIAA LAREAGWVVL PDGTTFPSSS SSSVSQPPPT  120
HQQLQPGRPS IAAPPLPSSP APPLRGISIS PVAARPISSL RSSSSIRIIS PPHALPDPLL  180
SLPSMDTQEV PDLLPPRPPE RDFAGTPYVP VYVMLPLGVV NGNGEVVDAD VLVGQLRVLK  240
AAGVDGVMVD CWWGNVEAHR PQEYNWTGYK RLFHMIRELK LKLQVVMSFH ECGGNVGDDV  300
SIPLPHWVTE IGRSNPDIYF TDRAGRRNTE CLSWGIDKER VLQGRTGVEV YFDYMRSFRV  360
EFDEYFEDGI ISEIEIGLGA CGELRYPSYP AKHGWKYPGI GEFQCYDRYL QKSLRRAAEA  420
RGHTIWARAP DSAGHYNSEP NLTGFFCDGG DYDSYYGRFF LNWYSQVLVD HADRVLMLAR  480
LAFEGSDIAV KVSGVHWWYK TASHAAELTA GFYNPCNRDG YASIAAVLKK HGAALNFTCV  540
ELRTMDQHEV FPEAFADPEG LVWQVLNAAW DAGIPVASEN ALPCYDRDGF NKILENAKPL  600
NDPDGRHLLG FTYLRLTKVL FERANFLEFE RFVKRMHGEA VLDLQCLSIQ VGHKKM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bya_A	1e-158	208	639	11	444	BETA-AMYLASE
1byb_A	1e-158	208	639	11	444	BETA-AMYLASE
1byc_A	1e-158	208	639	11	444	BETA-AMYLASE
1byd_A	1e-158	208	639	11	444	BETA-AMYLASE
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070300	0.0	AK070300.1 Oryza sativa Japonica Group cDNA clone:J023048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611670.2	0.0	beta-amylase 2, chloroplastic
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A0E0C6S5	0.0	A0A0E0C6S5_9ORYZ; Beta-amylase
STRING	ONIVA03G00490.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]