PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G25930.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 166aa    MW: 18281.3 Da    PI: 4.6845
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G25930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB54.43e-1733128695
            NF-YB   6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                      ++lP a v r++k+ l + a       + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ 
  OMERI01G25930.1  33 EELPKAIVRRLVKEKLAQVAAggaeviVNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRNK 126
                      679**********99976543222333899**************************************************************97 PP

            NF-YB  94 eg 95 
                      ++
  OMERI01G25930.1 127 NA 128
                      76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-3228163IPR009072Histone-fold
PfamPF008083.3E-1134104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471139.48E-2735160IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAGETGEGGE SHSQPEKQPG QAAAAFMAEA EVEELPKAIV RRLVKEKLAQ VAAGGAEVIV  60
NKDAMSAFAE SARIFIHYLS ATANDMCKES KRQTINADDV LKALDEMEFP EFVEPLNTSL  120
QEFRNKNAAR RSETTQKKAE KRRKIDKESL PQEQNDAADN GKTDED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426340.0AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611896.11e-104DNA polymerase epsilon subunit 3
TrEMBLA0A0E0C6T31e-117A0A0E0C6T3_9ORYZ; Uncharacterized protein
STRINGOMERI01G25160.11e-118(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-35nuclear factor Y, subunit B11