PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G26210.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 401aa    MW: 43311.8 Da    PI: 9.6256
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G26210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15181278295
                      EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      +k+l  sdv+++gr+vlpkk ae++     +  k ++k l + d+++ + W++k++y  ++ks++yvl+ ++ ++v+ ++L+ gD++v++ d+ 
  OMERI01G26210.1 181 QKELRYSDVSQLGRIVLPKKEAEAYlpiltS--KDGKKSLCMHDLQNaQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHDLQLGDSIVIYKDD- 270
                      688899**********************752..446678*****665599*******89999999**99.********************444. PP

                      SEE..EEE CS
               B3  88 sefelvvk 95 
                      ++ ++v++
  OMERI01G26210.1 271 ENNRFVIG 278
                      55555665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-23179287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-17179277IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-22179277No hitNo description
PROSITE profilePS508639.234180283IPR003340B3 DNA binding domain
SMARTSM010191.1E-13180283IPR003340B3 DNA binding domain
PfamPF023623.0E-12181278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRGEERWQEQ PALASHPSRA TLRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS  60
ASPPVLPPIK DQGARPPTLA ASAAAASSPP PPPPPIPPLP PSTSTSAARP TDMAGVTSKR  120
RSSSASTSSS SGDGAAVSDR PRGVTRKRRS GGRCPRPAAS LRPAAPRPSS HHTAGLRVIL  180
QKELRYSDVS QLGRIVLPKK EAEAYLPILT SKDGKKSLCM HDLQNAQLWT FKYRYWPNNK  240
SRMYVLENTG DYVRTHDLQL GDSIVIYKDD ENNRFVIGAK KAGDQQAATV PQVDEHISTL  300
FPIFPIAQVD DYLSPMAPQV DISAFVPHAD ENHEIFDGIL NSLPEIPVAN VRYSDFFDPF  360
DDGMDMANTL NANANQSASL HVTDDKSGHS LIPNPKSGPH M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-391762901114B3 domain-containing transcription factor FUS3
6j9b_D1e-391762901114B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149TRKRRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5211820.0EF521182.1 Orayza sativa japonica LFL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635173.10.0B3 domain-containing protein LFL1 isoform X4
SwissprotA4LBC00.0LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A0E0C6Y30.0A0A0E0C6Y3_9ORYZ; Uncharacterized protein
STRINGOMERI01G25530.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-39B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]