PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G26540.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 319aa    MW: 35633.5 Da    PI: 7.3543
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G26540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.41.2e-1066162186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyfd 83 
                      +W++  + aL++a  ++  r +r++l++  W evs+      ++ +   s +qC+++++ l+k+y+k+ke+++  +        +s s++ yfd
  OMERI01G26540.1  66 EWSEGSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSEQQCRNRIDTLRKKYRKEKERMRLAArrpdrpdRPSPSKWIYFD 159
                      5**********************************9997776444455799*******************998653111111134567888888 PP

         trihelix  84 qle 86 
                      +++
  OMERI01G26540.1 160 KMQ 162
                      886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.7E-1765164No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDDGAAPAAA AAEFPSPSPS SSGASPSPRS KRRRTDRYAQ GFEFAPRPTP APATTPAPTP  60
ARGTPEWSEG STFALLDAWG DRFVRAGRRS LRADEWLEVS RLAAAAASRP PGYYSEQQCR  120
NRIDTLRKKY RKEKERMRLA ARRPDRPDRP SPSKWIYFDK MQSLMCPPPL PLQPPVVTRR  180
RDTQPVPRQS WGLDAAEYVL GGCDNAGTRD SGSGAELGEE HPNEAGAGKR KDFELLVESI  240
RKLGDVYERV ESSKRQHMAE VERMRRDLQR DLEARRREIL EKAQAEIARL TEEDGEEGDL  300
KEGEGDDNKR FGDDGGGEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254265RQHMAEVERMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623327.11e-172uncharacterized protein LOC4324693
TrEMBLA0A0E0C7330.0A0A0E0C733_9ORYZ; Uncharacterized protein
STRINGOMERI01G25870.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-27Trihelix family protein