PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G26790.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 414aa    MW: 45755.2 Da    PI: 8.1917
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G26790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.3e-1673132155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  OMERI01G26790.1  73 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 132
                      789******************888855666447*************************98 PP
2AP251.23e-16175226155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  OMERI01G26790.1 175 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 226
                      89****************99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1273132IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1673141IPR016177DNA-binding domain
PROSITE profilePS5103219.80974140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1574141IPR001471AP2/ERF domain
SMARTSM003801.1E-2474146IPR001471AP2/ERF domain
CDDcd000188.51E-25175234No hitNo description
PfamPF008473.8E-11175226IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-17175235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-17176234IPR001471AP2/ERF domain
PROSITE profilePS5103218.979176234IPR001471AP2/ERF domain
SMARTSM003801.7E-26176240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDHSIMMVKN EIENYSGSSP AMIINAPEGG AEVGPVVRRR RREPSLLAPI SGDTNGGGIG  60
KSSLSGITVK RSSRFRGVSR HRWTGRFEAH LWDKNSWNPT QRKKGKQVYL GAYDEEEAAA  120
RAYDLAALKY WGPTTYTNFP VMDYEKELKI MENLTKEEYL ASLRRKSSGF SRGVSKYRGV  180
ARHHQNGRWE ARIGRVFGNK YLYLGTYSTQ EEAARAYDIA AIEYKGVNAV TNFDLRSYIT  240
WLKPTPAHVA MNPAEALAMQ IPVDHFLPME TQMMMLPQSN PFTSYHNAQS LGKGDGGSSS  300
SNNQEASMII SPSGSSRKRS STALSLLLKS SMFRQLVEKN SDAGEENGGE MREPGAHPGE  360
GYEYHNFFQG DAAPDMDMCD LLSSGNVHAA SGSAGFEEDI ACYSGFGSMQ SLQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851120.0AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881488.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0E0C7600.0A0A0E0C760_9ORYZ; Uncharacterized protein
STRINGOMERI01G26140.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-79AP2 family protein