PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G27190.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 186aa    MW: 21020.2 Da    PI: 8.2461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G27190.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17201041494
                      T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  14 grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      +rl +p  f+ ++        + + ++s + tl++++g++W v+l  +k +g+++lt+GW++Fv++n L+e +f++F++d+++ f  +v
  OMERI01G27190.4  20 RRLEIPQGFLIHIpevahsssDASLPSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTTGWSKFVEDNSLREYEFLLFRYDENMHF--MV 104
                      4689999999888888877773333488899**************..********************************998888..55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-226112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-226115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.3937110IPR003340B3 DNA binding domain
CDDcd100171.15E-158107No hitNo description
SMARTSM010193.0E-1410110IPR003340B3 DNA binding domain
PfamPF023627.2E-1520103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVAHSSS DASLPSSAKG TLQNSEGKTW  60
PVELEKLDGH VFLTTGWSKF VEDNSLREYE FLLFRYDENM HFMVLPFGLN ACEKVIRSSG  120
SPQGKLPCDI FCCTKKGQDG DRLTEAANSL TPSHSQLLCK GLLKAMSLFH HKVSLINMKY  180
AARKMG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.11e-106B3 domain-containing protein Os03g0120900
SwissprotQ5JNA11e-107Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0E0C7E51e-137A0A0E0C7E5_9ORYZ; Uncharacterized protein
STRINGOMERI01G26530.11e-108(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.14e-13B3 family protein