PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G28060.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 464aa    MW: 51025.1 Da    PI: 6.6268
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G28060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.1e-30249307259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  OMERI01G28060.1 249 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 307
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30246309IPR003657WRKY domain
SuperFamilySSF1182908.76E-26247309IPR003657WRKY domain
SMARTSM007742.9E-36248308IPR003657WRKY domain
PROSITE profilePS5081131.869249309IPR003657WRKY domain
PfamPF031065.7E-26250307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MVVSLRSVSD SVAAHKERHP LAGASIRCRI YKQACSQGEE REKERKRERE IIESCTHPFV  60
RHHFHPLHHE LQLAAHRSPP LLPPFSSLLF FSASVRDTAL SLWVGGVIIT KATKGARRDI  120
IYSFGKRWIS FSRFGLFIQS WRVCAPGVVV VMAAGEEVMD RSTSAEDGYC SAGTDSPRAE  180
SVDEQGAAEE SSPRGGQKRE LPSPSASPSS PLPPAAKRSR RSVEKRVVSV PIAECGDRPK  240
GAGEGPPPSD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR ADPTVLLVTY  300
SFEHNHPWPQ PKSSSCHASK SSPRSTAPKP EPAADGQPEP AENESSASAE LEVPEPEPES  360
EPVVKQEEEQ KEEQKAVVEP AAVTTTVAPA PAVEEEDENF DFGWIDQYHP TWHRSYAPLL  420
PPEEWERELQ GDDALFAGLG ELPECAVVFG RRRELGLAAT APCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-19225309679Disease resistance protein RRS1
5w3x_D4e-19225309679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8415830.0CT841583.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647591.11e-176probable WRKY transcription factor 65
TrEMBLA0A0E0C7R70.0A0A0E0C7R7_9ORYZ; Uncharacterized protein
STRINGOMERI01G27370.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-37WRKY DNA-binding protein 65