PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G28260.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 746aa    MW: 79464.1 Da    PI: 9.2276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G28260.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-20126177256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+  g  +r +lg+fgtaeeAa+a+++a+ +++g+
  OMERI01G28260.2 126 HYRGVRRRP-WGKYAAEIRDPTRHG--ARLWLGTFGTAEEAAAAYDRAAFRMRGA 177
                      7********.**********96544..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-30125184IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22126185IPR016177DNA-binding domain
PROSITE profilePS5103224.21126184IPR001471AP2/ERF domain
CDDcd000189.46E-18126186No hitNo description
PfamPF008471.1E-13126176IPR001471AP2/ERF domain
SMARTSM003808.3E-35126190IPR001471AP2/ERF domain
PRINTSPR003671.1E-9127138IPR001471AP2/ERF domain
PRINTSPR003671.1E-9150166IPR001471AP2/ERF domain
PfamPF000091.2E-28203348No hitNo description
SuperFamilySSF525405.31E-32204359IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5172227.567204350IPR000795Transcription factor, GTP-binding domain
Gene3DG3DSA:3.40.50.3003.9E-36205357IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF504473.74E-25299455IPR009000Translation protein, beta-barrel domain
CDDcd036917.61E-30357444No hitNo description
Gene3DG3DSA:2.40.30.108.1E-18358459No hitNo description
SuperFamilySSF549801.87E-10459543IPR009022Elongation factor G, III-V domain
Gene3DG3DSA:3.30.70.8701.1E-31460556No hitNo description
PfamPF006797.4E-19553637IPR000640Translation elongation factor EFG, V domain
SuperFamilySSF549801.34E-21554670IPR009022Elongation factor G, III-V domain
Gene3DG3DSA:3.30.70.2402.9E-24557636IPR000640Translation elongation factor EFG, V domain
CDDcd037101.10E-23569634No hitNo description
Gene3DG3DSA:2.40.50.2501.1E-27641720No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MSLSLGFSAG AGVGADRLAA APALQAAGAL PPRVDVDVSL SLARAANGQP SSYLPLNEND  60
SLDMVLFDVL REASAVAALS SSSSPELGAR TTVPVVAGHP AGRKGGGGGG GGRGAAARGG  120
AAGGRHYRGV RRRPWGKYAA EIRDPTRHGA RLWLGTFGTA EEAAAAYDRA AFRMRGAKAL  180
LNFPPAVAGD GIRRGGAEAA AAKQVTSVSW KENELNMVDT PGHADFGGEV ERVVGMVEGA  240
VLVVDAGEGP LAQTKFVLSK ALKYGLRPIL LLNKVDRPSV SEETCNEVES LVFDLFANLG  300
ATEEQLDFPV LYASAKEGWA SLEFTKSPPD NAKNMSALLD SILQHVPSPK ADLEAPFQML  360
VSMMERDFYL GRILTGRVRS GVVRVGDKVH GLRSTDDGVQ KIEDGKVVKL MKKKGTSMVI  420
VEAAGAGDII SMAGLAAPAI GHTVSNSDIL TALPTIELDP PTISMTFGVN DSPLAGRDGT  480
HLTGAKIGNR LMAEAETNLA INVLPGPLSE SYEVQGRGEL QLGILIENMR REGFELSVSP  540
PKVMYKTDRG ERLEPIEEVT VEVDEEHVGF VMETLTHRKG EVMDMGPVPG TTGRTRIFLT  600
CPSRGLVGFK GIFSSFTRGT GFMHRAFQAY AKYRGQLGNV RKGVLVSVGK GLITSHALMS  660
LEARGILFVS PGMEAYEGMI VGEHSRDSDL DINPVRTKEL TNIRAPGKDE NVRLSPPRLV  720
TPKVIRLRKK YLDATKRKMM KNKPMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zcm_A1e-14820674695640GTP-binding protein TypA/BipA
4zcm_B1e-14820674695640GTP-binding protein TypA/BipA
5a9v_A1e-14820674661606GTP-BINDING PROTEIN
5a9v_B1e-14820674661606GTP-BINDING PROTEIN
5a9v_C1e-14820674661606GTP-BINDING PROTEIN
5a9v_D1e-14820674661606GTP-BINDING PROTEIN
5a9v_E1e-14820674661606GTP-BINDING PROTEIN
5a9v_F1e-14820674661606GTP-BINDING PROTEIN
5a9w_A1e-14820674661606GTP-BINDING PROTEIN
5a9x_A1e-14820674661606GTP-BINDING PROTEIN
5a9y_A1e-14820674661606GTP-BINDING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103112KGGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685440.0AK068544.1 Oryza sativa Japonica Group cDNA clone:J013155A22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615491.10.0uncharacterized protein LOC4327008
TrEMBLA0A0E0C7U10.0A0A0E0C7U1_9ORYZ; Uncharacterized protein
STRINGOMERI01G27570.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.16e-12ethylene responsive element binding factor 2