PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G28840.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 623aa    MW: 67258.5 Da    PI: 8.9099
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G28840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR40.94.1e-13160198241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      +kk CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ +
  OMERI01G28840.1 160 KKKCCNCKHSKCLKLYCECFASGVYCDG-CNCSNCFNNVK 198
                      799*************************.********987 PP
2TCR50.83.3e-16244283140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  OMERI01G28840.1 244 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 283
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-14159199IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.911160284IPR005172CRC domain
PfamPF036381.7E-9161196IPR005172CRC domain
SMARTSM011148.4E-20244285IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12247282IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAGKEQQGGG GQPPPPPPRA PVPAASSQPP IKKLVRQLDF TSAALAGNPA MAAAAAAVSR  60
ALQPRAVPVG FPQPQQLRAH LPVGVPQQLH PRGLPVMRSH HVVHVPLPRP AVAVAVPVPQ  120
VRPAQPQPVP RPPVAVPLKP ESPKPPRARL YEGKDGTPTK KKCCNCKHSK CLKLYCECFA  180
SGVYCDGCNC SNCFNNVKNE AARREAIDAT LERNPDAFRP KIGSSPHANR NNMEAAGDLP  240
LVGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK NFEGSEERKA LFQGDHKNSI  300
HMQQAANAAV NGAIGAAAFS SPSTSRKRKH IDPSLDHSAA KENGAHRTNH IPQKNGMPSD  360
GPLPINQPVH PPTLGPFKVT YRPLLADIVQ PGDVKELCKL LVVVSGNAAK AYAGKKSQED  420
KVVEKEDEMG GKREDEIGGS LASTNHDREE NNKDPNNQKA SADDPSTGGT RAGKASLEES  480
KHDCNDDQKS NRPMSPGTLA LMCDEQDTMF MTSQNVVPQQ AAPVNQNQSE LYAEQERCVL  540
TEFRDCLHKL VTFGRMKEEK FSMAIKSEVP AHPMQANGVS RIPYSKEVDV PVVKTFLQSS  600
SRHPAAGNSA TGHLDKKPKH ENT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-2916429314132Protein lin-54 homolog
5fd3_B5e-2916429314132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221120.0AK122112.1 Oryza sativa Japonica Group cDNA clone:J033127O09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621699.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A0E0C8090.0A0A0E0C809_9ORYZ; Uncharacterized protein
STRINGOMERI01G28120.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-127Tesmin/TSO1-like CXC domain-containing protein