PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G29650.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 313aa    MW: 34188.2 Da    PI: 4.8936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G29650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-12137186455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h +rEr RR+r+ ++++ L+ +lP+ a   +s K  K +i+  A +YI++L+
  OMERI01G29650.1 137 RHIMRERLRRERLSQGYADLQAILPTgA---SSSKGGKNTIVAAAANYIRELE 186
                      599***********************88...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014477.06E-54453No hitNo description
SuperFamilySSF474596.15E-14132203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.427133185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-10135202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-9137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-8139191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF1014477.06E-5240257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MQAQPAMEND DDVEHPFYYF VHDDAAAGVD DHEELLASLG FLLPPPPPPP PPPQPDQGRS  60
AFAAYQSTAA MASSSSSSES LSRRYHSSAS NVHRRMHRFL RSIYDDAGDD AGATTEMQPA  120
EGEQQQAAPS GGSARFRHIM RERLRRERLS QGYADLQAIL PTGASSSKGG KNTIVAAAAN  180
YIRELEGRKG WLCAQNELLE RTTPKPGAGM VVKVRAESEL GSTVDVFEAV LRRLKAMDEL  240
QVTAIQSWFG AGGMWMDVAV ESKISSREVD KAITNALKEL QEIEYSEYSC LQDPMRSGTS  300
FSCQVESGVL LMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032650.0AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635057.10.0transcription factor BHLH148-like
TrEMBLA0A0E0C8D50.0A0A0E0C8D5_9ORYZ; Uncharacterized protein
STRINGORUFI01G35930.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432