PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G29920.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 417aa MW: 45269 Da PI: 10.5032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G29920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	339	359	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + +L++H++++ OMERI01G29920.1 339 RCSQCGKEF-KPQELHSHMQSC 359 6******.*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	8.4E-35	23	165	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MEKGGGSQKG GGGGGGGGEA RRINVVYFLS RGGRTDHPHL FRVNHHRAGV RLRDVKRWLS 60 ELRGQDMADN FSWSYKRKYK AGYIWQDLMM DDDLITPISD NEYVLKGCDV RRATESPKEK 120 SSSLAEEPKK LNSQEVKVAC DQKQVEEVTT TTAPDSDERS PKKPPPADQD SPVGEGGEPA 180 SRSTAPLKKD LPRGLREERK KQQREVVKVV SKAVVVPAPA PEQKVKGAAS GRISSHPPPA 240 VGSARRMHLA QLLHNLLTCG AADADDTALR PVLRHGAAGA DDDGGDWPRT PVCPGIDGCG 300 LRVGKKVKVR RGGKDKAKPK RDGGKRDGGD SHKPASLPRC SQCGKEFKPQ ELHSHMQSCR 360 VFREKMRSST SSRVSVDRGR TSAAARTEHR RTRSKGAAAA PGDTSDRPSA VLLLRDS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MEKGGGSQKG GGGGGGGGEA RRINVVYFLS RGGRTDHPHL FRVNHHRAGV RLRDVKRWLS  60
ELRGQDMADN FSWSYKRKYK AGYIWQDLMM DDDLITPISD NEYVLKGCDV RRATESPKEK  120
SSSLAEEPKK LNSQEVKVAC DQKQVEEVTT TTAPDSDERS PKKPPPADQD SPVGEGGEPA  180
SRSTAPLKKD LPRGLREERK KQQREVVKVV SKAVVVPAPA PEQKVKGAAS GRISSHPPPA  240
VGSARRMHLA QLLHNLLTCG AADADDTALR PVLRHGAAGA DDDGGDWPRT PVCPGIDGCG  300
LRVGKKVKVR RGGKDKAKPK RDGGKRDGGD SHKPASLPRC SQCGKEFKPQ ELHSHMQSCR  360
VFREKMRSST SSRVSVDRGR TSAAARTEHR RTRSKGAAAA PGDTSDRPSA VLLLRDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241481	0.0	AK241481.1 Oryza sativa Japonica Group cDNA, clone: J065166E16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633111.1	0.0	protein UPSTREAM OF FLC
Refseq	XP_025877314.1	0.0	protein UPSTREAM OF FLC
TrEMBL	A0A0E0C8H0	0.0	A0A0E0C8H0_9ORYZ; Uncharacterized protein
STRING	OMERI01G29350.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10794	12	13