PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G30260.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 396aa    MW: 41855.6 Da    PI: 6.5818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G30260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171e-052873241254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OMERI01G30260.1 287 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 324
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11285339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.50E-6285329No hitNo description
SMARTSM003530.0035286330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9289332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MADEWWSASQ RSHGTSACSA APSPLTADRV SCGWTSPSAA AAAESTSSIT FQDPSRSSAA  60
HHQPLSDAAS SLGDPHMVDW TQAFLSGRSD ASFQAVLQDD MAASTRPFRA QPTAADEAVM  120
TDPFRDMGVG QGLLLDQASA PYGTAPLHGL SFDAGEPAVA PATHSITTSF GDYQHSASYE  180
AAAAVMQFSQ TPRAPSLPAA AQMQFLSGSY QLPFGGAPPL PSQLLLQAMQ PKPSCSSNAN  240
TLLAKSNSGS AQQICSSAGR KSVSDSPASA KRPRIEAPSP LPTFKVRKEK LGDRITALQQ  300
LVSPFGKTDT ASVLHEAIEY IKFLHEQVAS LSSPYLKNGN PLQHFQQKGS ESTKDTEPKP  360
DLRSRGLCLV PVASTYTVAS ETVPEFWHPT FGGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633446.10.0transcription factor bHLH123
TrEMBLA0A0E0C8M20.0A0A0E0C8M2_9ORYZ; Uncharacterized protein
STRINGOGLUM01G37590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-51bHLH family protein