PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G32090.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 378aa    MW: 40677.2 Da    PI: 6.0141
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G32090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64e-1077134155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ykGV +++ +g+++A+++d   +n    rkr + g ++t+e Aa+ ++ a++k++g
  OMERI01G32090.1  77 SIYKGVARHRGSGKYEAHLWDkQGWNPnqTRKRGRQGAYDTEEAAARTYDLAALKIWG 134
                      57*******************555533445599999*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.74E-1777144No hitNo description
SuperFamilySSF541719.81E-1477144IPR016177DNA-binding domain
PfamPF008471.8E-777134IPR001471AP2/ERF domain
PROSITE profilePS5103218.41378142IPR001471AP2/ERF domain
SMARTSM003807.5E-1878148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1378142IPR001471AP2/ERF domain
SMARTSM003802.4E-4152207IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-5175203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-7175202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVSMRKKKKA FAVAAATTLL SPPRSSSSSS STASSCIVPP CTESGKKKSK HRKRAKDGTA  60
GDDDDAAVAA APRKGSSIYK GVARHRGSGK YEAHLWDKQG WNPNQTRKRG RQGAYDTEEA  120
AARTYDLAAL KIWGSDHVLN FPIDTYSQEL ERMQRMTREE YLATLRRKSS GFSRDTQEEA  180
ATAYDLAAIQ LRGSSAVTNF DASCYTDHLP PPPPSVCKTE PELEPPAAAA SSGPEPLLRP  240
KMEPCDDDWE PPAVCPALRD ADDADHAIAE ILPALCMDRA DFEARYPARR ARDAADGWST  300
SSASVDDVRG LPDDVGFVDD VESLFLDAPG PAAAAAANAM PDDVERAVQL APSGASRRAN  360
AAAISYAISS LASGRWWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0035700.0AP003570.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0432B10.
GenBankAP0043310.0AP004331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646190.21e-172AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0E0C9E00.0A0A0E0C9E0_9ORYZ; Uncharacterized protein
STRINGOMERI01G31550.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-46AP2 family protein