PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G32480.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 282aa    MW: 30665.5 Da    PI: 5.9393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G32480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.91.6e-1671127359
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversa.edpkvveitYegeHnhe 59 
                      Dg+ WrKYGqK++k+s fpr  Yr   ++C + k v++++ +dp +  +tY+ eH+++
  OMERI01G32480.1  71 DGHLWRKYGQKNIKDSAFPRCSYR-EDRQCLASKLVQQENdDDPPLYRVTYTYEHTCN 127
                      9*******************9999.5679*******987516899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-1761127IPR003657WRKY domain
SuperFamilySSF1182901.57E-1664128IPR003657WRKY domain
SMARTSM007742.0E-2769128IPR003657WRKY domain
PfamPF031061.8E-1971126IPR003657WRKY domain
PROSITE profilePS5081112.2271129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASPRLKREQ LFDFEEASAQ EAVGSASASY SPPGGGGVFG ISPPESSPRD GRKRRKDRPS  60
LVKHTFTPHF DGHLWRKYGQ KNIKDSAFPR CSYREDRQCL ASKLVQQEND DDPPLYRVTY  120
TYEHTCNTTP VPTPDVVAEQ PAPGAAGDAY LLRFGSSSAA SAAGGGGGGC GHQQQTERER  180
QQQNTARRPF MMLSFDTSSS HLHEQPHAFP PDGQLPTAAS PFTAAEALPP PPAQPPLTTT  240
TNDGGDLFST WDALRYGLDY DHGHLGNHVY LSDDCNGGDD NY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156RKRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644112.11e-143probable WRKY transcription factor 2
TrEMBLA0A0E0C9J50.0A0A0E0C9J5_9ORYZ; Uncharacterized protein
STRINGOMERI01G31890.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.16e-14WRKY DNA-binding protein 38