PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G33390.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 180aa MW: 19311.8 Da PI: 6.1178

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G33390.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.1	3.5e-55	36	129	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre + OMERI01G33390.2 36 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREGD 129 69*****************************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-52	34	138	IPR009072	Histone-fold
SuperFamily	SSF47113	4.04E-39	39	134	IPR009072	Histone-fold
Pfam	PF00808	3.8E-28	42	106	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.7E-22	70	88	No hit	No description
PROSITE pattern	PS00685	0	73	89	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.7E-22	89	107	No hit	No description
PRINTS	PR00615	2.7E-22	108	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MVCAVMMMDL GFLEGGAGMA DAGHDESGSP PRSGGVREQD RFLPIANISR IMKKAVPANG 60 KIAKDAKETL QECVSEFISF VTSEASDKCQ KEKRKTINGE DLLFAMGTLG FEEYVDPLKI 120 YLHKYREGDS KLSSKAGDGS VKKDTIGPHS GASSSSAQGM VGAYTQGMGY MQPQYHNGDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-48	36	127	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-48	36	127	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269\|PubMed:14617083}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB095438	0.0	AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611518.2	1e-118	nuclear transcription factor Y subunit B-2 isoform X1
Swissprot	Q5QMG3	1e-119	NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBL	A0A0E0C9Y1	1e-131	A0A0E0C9Y1_9ORYZ; Uncharacterized protein
STRING	OGLUM01G40190.1	1e-121	(Oryza glumipatula)
STRING	ORUFI01G39650.2	1e-121	(Oryza rufipogon)
STRING	ONIVA01G41260.2	1e-121	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	1e-65	nuclear factor Y, subunit B8