PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G33390.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 205aa MW: 22306.5 Da PI: 6.5115

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G33390.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.6	4.8e-55	36	129	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre + OMERI01G33390.3 36 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREGD 129 69*****************************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-52	34	138	IPR009072	Histone-fold
SuperFamily	SSF47113	5.74E-39	39	134	IPR009072	Histone-fold
Pfam	PF00808	5.0E-28	42	106	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.6E-22	70	88	No hit	No description
PROSITE pattern	PS00685	0	73	89	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.6E-22	89	107	No hit	No description
PRINTS	PR00615	3.6E-22	108	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MVCAVMMMDL GFLEGGAGMA DAGHDESGSP PRSGGVREQD RFLPIANISR IMKKAVPANG 60 KIAKDAKETL QECVSEFISF VTSEASDKCQ KEKRKTINGE DLLFAMGTLG FEEYVDPLKI 120 YLHKYREGDS KLSSKAGDGS VKKDTIGPHS GASSSSAQGM VGAYTQGMGY MQPQSNFHIL 180 VVLQSFAFPY MYQVAQIYCK YPSIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-48	36	127	1	92	Transcription factor HapC (Eurofung)
4g92_B	8e-48	36	127	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269\|PubMed:14617083}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY332466	0.0	AY332466.1 Oryza sativa (japonica cultivar-group) CCAAT-binding protein (CCB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611518.2	1e-111	nuclear transcription factor Y subunit B-2 isoform X1
Swissprot	Q5QMG3	1e-112	NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBL	A0A0E0C9Y2	1e-150	A0A0E0C9Y2_9ORYZ; Uncharacterized protein
STRING	OPUNC01G35060.2	1e-130	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	5e-65	nuclear factor Y, subunit B8