PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G33680.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 218aa    MW: 22668.8 Da    PI: 8.9208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G33680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00136385123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  OMERI01G33680.1 63 FECKTCNRQFPTFQALGGHRASH 85
                     89**********99999998887 PP
2zf-C2H210.70.0017125147123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp Cg  F+    L  H+r+H
  OMERI01G33680.1 125 HECPVCGLEFPIGQALGGHMRRH 147
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-86185No hitNo description
PfamPF139121.1E-126287IPR007087Zinc finger, C2H2
SMARTSM003550.186385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1186390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-8120147No hitNo description
PfamPF139124.2E-11124149IPR007087Zinc finger, C2H2
SMARTSM003550.14125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSKRSRSMWE MQEFIGSVDT ARVLMLLAQQ SQHGVLGGGG GGGVFAAGAQ PLVVRGGAHD  60
RVFECKTCNR QFPTFQALGG HRASHKRPRQ QQQHALGGGG GDDAGLCLGR QPTPPRPQPA  120
KPRVHECPVC GLEFPIGQAL GGHMRRHRAE AEAAATTTTT TNGDVGKAAA VKACDGGGVC  180
LDLNLTPSEN CAKCRNVVGL GAGGQGVHKA LAMLDCFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032310.0AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633806.11e-104zinc finger protein ZAT12
TrEMBLA0A0E0CA201e-156A0A0E0CA20_9ORYZ; Uncharacterized protein
STRINGOMERI01G33160.11e-156(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-25C2H2 family protein