PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G33710.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 168aa    MW: 17359.4 Da    PI: 5.9189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G33710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000964264123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k+F++   L  H  +H
  OMERI01G33710.1 42 FECKTCSKRFPSFQALGGHRTSH 64
                     89**********99998888777 PP
2zf-C2H211.50.000991113123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg  Fs    L  H+r+H
  OMERI01G33710.1  91 HECAVCGVEFSMGQALGGHMRRH 113
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.69E-63966No hitNo description
PfamPF139123.6E-124164IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4294269IPR007087Zinc finger, C2H2
SMARTSM003550.184264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-689117No hitNo description
Gene3DG3DSA:3.30.160.602.3E-490117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.2E-1290115IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9991118IPR007087Zinc finger, C2H2
SMARTSM003550.8991113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MESLRVHASA LLSLSSPAAS ASQPTSSSTP AGRRALAAEG VFECKTCSKR FPSFQALGGH  60
RTSHTRLQAK LLSDPAAAAA AAAERERARV HECAVCGVEF SMGQALGGHM RRHRGETGTA  120
TVVLADADAD DSGGATVPQP PEAMPDLNYP PLEDAGDGSE PELLNLLV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8313980.0CT831398.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634661.11e-81zinc finger protein ZAT8
SwissprotQ424531e-23ZAT7_ARATH; Zinc finger protein ZAT7
TrEMBLA0A0E0CA221e-116A0A0E0CA22_9ORYZ; Uncharacterized protein
STRINGOMERI01G33190.11e-117(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.12e-22C2H2 family protein