PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G33930.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 794aa    MW: 87777.8 Da    PI: 5.7867
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G33930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS37.82.8e-12444496254
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarla 54 
                      ++lL++cA+ v+++d + a++lL++++++a  +gd  qRla++f+++L+arla
  OMERI01G33930.1 444 ETLLIHCAQSVATDDRRSATELLKQIRQHAHDSGDGDQRLAHCFANGLEARLA 496
                      789************************************************97 PP
2GRAS313.35.3e-9649778487374
             GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                      ++P+ k+sh  aNq+Il+ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfef
  OMERI01G33930.1 497 ACPFKKISHYFANQTILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERTEETGRYLSDYAQTFNVPFEF 590
                      7********************************************************************************************* PP

             GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                      ++ +a+r+e++++e+L+++++E+l+Vn++++ ++l+desv  es+r+  Lk++++++P+++++   + ++n++ F++rf eal +ysa+fd+le
  OMERI01G33930.1 591 QA-IASRFETVRMEDLHIEEDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRKMNPHLFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLE 683
                      **.7****************************************************************************************** PP

             GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                      +++pr++e+r  +E +l++re+ nv++ceg er er et+++W+ r ++aG+k++pl+++++k a+  +r +++d + ++e++ +l++gWk+r 
  OMERI01G33930.1 684 TNIPRDNEQRLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRAGLKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRI 776
                      *************************************************************************77.****************** PP

             GRAS 367 LvsvSaWr 374
                      L+++S W+
  OMERI01G33930.1 777 LFALSTWK 784
                      *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.714417765IPR005202Transcription factor GRAS
PfamPF035149.6E-10444496IPR005202Transcription factor GRAS
PfamPF035141.8E-93497784IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MVMDAGVHDV CTMLPGSKRD AHLPLQIYPQ IAAANGFATA EEFDPLLFLS PDAVCGGGGG  60
DYLNIVSPQP ISAASTNGAS PPRDVSVSAS AASSSAAQHD DSEAFSDIVL GYINRMLMAE  120
DIDEKFEHYP VNAADLLAAE KPFLEILADQ SPYSGGSSVE SPDGSSAANS CNSLSPCNCS  180
SSSDGLGAVP QTPVLEFPTA AFSQTPQLYG DLIPTGGMVE SGGAWPYDPM EFYQLQTKPV  240
RENLLSQSSS FASSNGSSVT FSEGFESLLS PAGVLPDVSL NDFVVQSQQA LQFRRGFQEA  300
SKFLPDESKL VIDVDKLYSG DEGSRFLGEV RQEKKLVKVK TETSDVESAG HRGKKHFYGD  360
DLDAEEGRCS KHSAQGIDTD HLVRDLMDKV LLCNGETCSK GVKELREALQ HDVAKHSGGG  420
HGKGSSHGKG RGKKQPKKEV VDLETLLIHC AQSVATDDRR SATELLKQIR QHAHDSGDGD  480
QRLAHCFANG LEARLAACPF KKISHYFANQ TILNAVEKAK KVHIVDYGIY YGFQWPCLIQ  540
RLSNRPGGPP KLRITGIDTP QPGFRPAERT EETGRYLSDY AQTFNVPFEF QAIASRFETV  600
RMEDLHIEED EVLIVNCMFK FKNLMDESVV AESPRNMALK TIRKMNPHLF IHGVVNGSYN  660
APFFVTRFRE ALFHYSAIFD MLETNIPRDN EQRLLIESAL FSREAINVIS CEGLERMERP  720
ETYKQWQVRN QRAGLKQLPL NQDMMKRARE KVRCYHKDFI IDEDNRWLLQ GWKGRILFAL  780
STWKPDNRSI VGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-494477848375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619294.10.0scarecrow-like protein 9 isoform X1
TrEMBLA0A0E0CA520.0A0A0E0CA52_9ORYZ; Uncharacterized protein
STRINGOMERI01G33430.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-161GRAS family protein