PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G33960.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 183aa    MW: 19518.4 Da    PI: 6.6223
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G33960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY543.2e-1720562258
                     EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                      sYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h
  OMERI01G33960.1 20 LSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 56
                     59**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.7E-8958IPR003657WRKY domain
PfamPF031061.4E-121956IPR003657WRKY domain
SuperFamilySSF1182907.45E-131958IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-152057IPR003657WRKY domain
PROSITE profilePS5081115.7092159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MFSDEQSFSE KPKFVGSRQL SYYKCTSSRC SAKKHVEKST DDPEMLIVTY EGSHHHGPQP  60
LHIALPPPPT SVVGFSAAAG AEPSSSSPAA VARKRKNDVR AAFSPTTSED DVDGAELHRR  120
GDARHAAPRR VATDRSCDDG GGGSTSASSS VARADAATAL SSDSPPTIWS CLDWPWSQET  180
LFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-111CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.11e-61WRKY transcription factor WRKY28
TrEMBLA0A0E0CA591e-130A0A0E0CA59_9ORYZ; Uncharacterized protein
STRINGOMERI01G33470.11e-112(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-11WRKY DNA-binding protein 57