PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G33970.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 204aa    MW: 22028.8 Da    PI: 9.0967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G33970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.93e-11145165222
                      --SS-EEEEEEE--TT-SS-E CS
             WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                       Dgy+WrKYGqK++k++++pr
  OMERI01G33970.1 145 ADGYKWRKYGQKSIKNNPHPR 165
                      6*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-10141166IPR003657WRKY domain
SuperFamilySSF1182907.45E-9142166IPR003657WRKY domain
SMARTSM007744.7E-6144183IPR003657WRKY domain
PROSITE profilePS5081111.417146174IPR003657WRKY domain
PfamPF031064.1E-8146166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGDVLRARAP ATASAEEVAG GVWPSELDEH LIGELLGDDG LFVPAAEHRD LYYSFDAGSS  60
AAAAAAPCNG GGSADHERRP RPAPAVSRAL CSVYSGPTIR DIEKALSSSA SPRPPYPSGR  120
RYSSLVEAES KYTSKVRSCG GKMPADGYKW RKYGQKSIKN NPHPRCATRS IIRSNLPLLA  180
LSFSFNPNYI FFHQLYPSFT GLHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8355090.0CT835509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.12e-94WRKY transcription factor WRKY28
TrEMBLA0A0E0CA601e-147A0A0E0CA60_9ORYZ; Uncharacterized protein
STRINGOMERI01G33470.11e-105(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-12WRKY DNA-binding protein 49