PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G34260.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 610aa    MW: 64981.4 Da    PI: 7.9703
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G34260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-103884251954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  OMERI01G34260.1 388 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 425
                      554459******************************88 PP
2BELL97.31.3e-31252321372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q kk+kL+s++eeV+krY+qy++q+q+v++sFe+vag  +a+p+++lAl+a+++hF+cLk +i +q+
  OMERI01G34260.1 252 AEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMAKHFKCLKSMILNQL 321
                      5899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-35177319IPR006563POX domain
PfamPF075261.9E-36182317IPR006563POX domain
PROSITE profilePS5007112.228366429IPR001356Homeobox domain
CDDcd000862.15E-13369430No hitNo description
SMARTSM003897.4E-11369433IPR001356Homeobox domain
SuperFamilySSF466894.06E-17371438IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28372433IPR009057Homeodomain-like
PfamPF059206.5E-19386425IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MSSAAGGGGY GGGQGGGAEH HHHHQHGHAG HLLLHHHPQH VAGAAVAAAA AAAGGQMYHV  60
PQHSRREKLR FPPDAGDSPP PHGHAPQQQQ QQHGSWPPPP AFYSYASSSS SYSPHSPTLA  120
QAQLVAHGLA PPLPQIPTQN FSLSLSSASS NPPPPQAQPR RQLGGLAQAT GPFGPFTGYA  180
AVLGRSRFLG PAEKLFEEIC DVGGAASHVD RTISDEGLLD ADPMDGVDHD VVDHDLGGAD  240
RAAADAGPIS GAEQQWKKTK LISMMEEVCK RYRQYYQQVQ AVMASFETVA GFSNAAPFAA  300
LALRAMAKHF KCLKSMILNQ LRNTSNKVAV KDGLNKDIAV FGLAGGSSGG AGLQRGNSAS  360
AFGQPHNIWR PQRGLPERAV SVLRAWLFEH FLHPYPTDGD KQMLAKQTGL TRNQVSNWFI  420
NARVRLWKPM VEEIHNLEMR QMHKHSVVDK GQHSVHHQAQ HSSQCSGNPS VPSDSHPGQS  480
SSITRNHNTA ASQGLPDELS QMSQSIQGQV SFAYNGLTSQ HNIASPHHQH QQVGGVGIGG  540
GNGGVSLTLG LHQNNRVCIA EPLPAALPAN LAHRFGLEEV SDAYVMSSFG GQDRHFGKEI  600
GGHLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17375432158Homeobox protein Meis1
4xrs_B7e-17375432158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0713300.0AB071330.1 Oryza sativa Indica Group qSH-1 mRNA for qSH-1, complete cds.
GenBankAB0713310.0AB071331.1 Oryza sativa Japonica Group qSH-1 mRNA for qSH-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688150.10.0PREDICTED: BEL1-like homeodomain protein 9, partial
TrEMBLA0A0E0CAA90.0A0A0E0CAA9_9ORYZ; Uncharacterized protein
STRINGOMERI01G33760.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-58BEL1-like homeodomain 8