PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G34920.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 377aa    MW: 41399.6 Da    PI: 6.5567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G34920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-06216235120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + C+ C+k+F+r  n++ H+
  OMERI01G34920.1 216 FICHVCNKTFNRYNNMQMHM 235
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-5212239No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5216235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201216243IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
SuperFamilySSF576674.75E-5284320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MRVGLRTCSA MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSLSSMASR DQETVVPGED  60
GGGEIQEDRK SGMTCLPLLS MLEEGNSKRH EHPVKEEIMS SAHAAGVVEP GVELNIGLPV  120
TGSSAQEVTM EEDDEEEDDD DVGEEEMDEW KPMHGGCKVE GDEEQYGEAV ASVEGSSSIT  180
AVGDMFGGVG AESGVAMSSR YWIPTPAQIL VGPVQFICHV CNKTFNRYNN MQMHMWGHGR  240
EYRKGPESLK GTQTLAMLKL PCYCCAAGCK NNVAHPRARP LKDFRTLQTH YKRKHGAKPF  300
RCRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGAH HLPVAESSSS  360
AAAAAPADKD RIISFQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625834.10.0protein TRANSPARENT TESTA 1
TrEMBLA0A0E0CAK40.0A0A0E0CAK4_9ORYZ; Uncharacterized protein
STRINGOMERI01G34410.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.17e-94WIP domain protein 5