PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G36880.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 409aa    MW: 42370.8 Da    PI: 6.2005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G36880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05105127123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F ++   + H+r+H
  OMERI01G36880.1 105 FPCHVCSKEFGSRKAVHGHMRVH 127
                      89*******************99 PP
2zf-C2H216.81.9e-05298320123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk Fs+   L  H+r+H
  OMERI01G36880.1 298 HPCKTCGKEFSTGVALGGHMRKH 320
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0012104128IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.676105132IPR007087Zinc finger, C2H2
SuperFamilySSF576676.14E-9105127No hitNo description
SMARTSM003550.0089105127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SMARTSM003555245269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247269IPR007087Zinc finger, C2H2
SuperFamilySSF576676.14E-9293320No hitNo description
PROSITE profilePS5015711.219298325IPR007087Zinc finger, C2H2
PfamPF139123.9E-10298322IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-4298320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.019298320IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRNEEE EEEGVNPASK RRRLEDILAE  60
TRGALPLPSP TPSSSGSEGT ISDDHGDGIA GAAAAADAPV ARVAFPCHVC SKEFGSRKAV  120
HGHMRVHQAD KDKEKEPSLH LALGWTSTGK RGANGNARAV TVAFAPMEQA VGDDDGDARA  180
IVLAPAAQPQ PQPMVVAEAA NPPNQVADDN HRLPVPAAAP YVGAAAAPAR RRARPKRNAG  240
QGGPYRCSYP GCKGEYRTHQ GLGGHVAGHI NREKQAAAAA QGGSGGGLGG GARPEGNHPC  300
KTCGKEFSTG VALGGHMRKH YDPKKKKKHA GLVLTLSVAP PTPAPAPSIA GAALPPAEVK  360
ADVDEHEAEQ VPMAPVSPPA EVRGNIVRIF GVDIEKPADE EEQEGGSDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14953KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881238.10.0zinc finger protein ZAT1-like
TrEMBLA0A0E0CBC10.0A0A0E0CBC1_9ORYZ; Uncharacterized protein
STRINGOMERI01G36300.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-09C2H2 family protein