PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G37620.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 717aa    MW: 74072.6 Da    PI: 7.261
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G37620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11302358155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OMERI01G37620.1 302 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 358
                      57*******************4444.2455535555.779999**************98 PP
2AP246.68.2e-15401452155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OMERI01G37620.1 401 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 452
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-15302368IPR016177DNA-binding domain
CDDcd000182.14E-17302368No hitNo description
PfamPF008475.3E-9302358IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-12303367IPR001471AP2/ERF domain
SMARTSM003809.2E-23303372IPR001471AP2/ERF domain
PROSITE profilePS5103217.385303366IPR001471AP2/ERF domain
PRINTSPR003673.9E-6304315IPR001471AP2/ERF domain
CDDcd000185.71E-23401462No hitNo description
PfamPF008471.0E-9401452IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17401462IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-18402461IPR001471AP2/ERF domain
SMARTSM003801.5E-33402466IPR001471AP2/ERF domain
PROSITE profilePS5103219.045402460IPR001471AP2/ERF domain
PRINTSPR003673.9E-6442462IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MAGRQGFVSS SRVQCESSSM ATMNNWLAFS LSPQDQLPPS QANSTLISAA AATTTTGDSS  60
AGDVCFNIPQ DWSMRGSELS ALIAEPKLED FLGGISFSEQ QQQHHHGGKG GVIPSSAAAC  120
YASSGSSVGY LYPPPSSSSL QFADSVMVAT SSSPVVAHDG VSGGGMVSTA AAAAAGGNGG  180
IGLSMIKNWL RSQPAQALSL SMNMAGATTA QGGGAMALLA GAGERGRTTP AAESLSTSAH  240
GATTTTMAGG RKETNEECSG STGAVVAVVG SESGGSGAVV EAGAAAAAAA RKSVDTFGQR  300
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEEKAARAYD LAALKYWGPT  360
TTTNFPVNNY EKELEEMKHM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG  420
RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL DSAALPVGTA  480
AKRLKDAEAA AAYGVGRISS QLGGDGAYAA HYGHHHHHTA AAAAWPTIAF QAAPPPTHAA  540
AAAGMYHPYA QPLRGWCKQE QDHAVIAAAH SLQDLHHLNL GAAAAHDFFS AAAAAQAMHQ  600
QQQHGLGSSI DNNASLEHST GSNSVVYNGD NGGGGGGYIM PTAAAVASSH DHGGDGGKQV  660
QMGYDSYLVG ADAYGGGGGG RMPSWAMTPA SAPAATSSSD MTGVCHGAQL FSVWNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634444.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0E0CBM30.0A0A0E0CBM3_9ORYZ; Uncharacterized protein
STRINGOBART01G40650.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-115AINTEGUMENTA-like 5