PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G37870.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 529aa    MW: 57368.2 Da    PI: 6.505
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G37870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.93.2e-1061545281374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetsekn..sseelaalklfsevsP 89 
                      lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +          + + s+       +  al l +e++P
  OMERI01G37870.1 154 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFVQGLADRLALAHPPALGPAsmaFCIPPSSCAgrDGARGEALALAYELCP 247
                      689**************************************************98555443222111222222222445667788889****** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                      +l+f+h++aN  +lea+ege+ vH++D++++     G QW  Ll+ La+R++g+p ++R+Tgvg+    + ++++++++ L+ +Ae lg+ +ef
  OMERI01G37870.1 248 YLRFAHFVANACMLEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTMRAIKRELEAYAEGLGMYLEF 337
                      ***************************98762222567*************77666*********....9************************ PP

             GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                      +  + + le+l++++L v+ +Ea+a+n+vl+lh++++es    +   +vL+++++lsP+ +v+veq+a hn++ Fl rf+eal+yy+alfd+l+
  OMERI01G37870.1 338 RG-INRGLENLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALD 427
                      **.799******************************88877777...8********************************************** PP

             GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365
                      a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++    ++a+  l + + + gy+v ee+g+lvlgWk++
  OMERI01G37870.1 428 AALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGGGYTVAEEKGCLVLGWKGK 519
                      *********************************************************754..467777777776999***************** PP

             GRAS 366 pLvsvSaWr 374
                      p++++S+W+
  OMERI01G37870.1 520 PVIAASCWK 528
                      ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.072128509IPR005202Transcription factor GRAS
PfamPF035141.1E-103154528IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGMSPEPCNS ISDCSQQQSH HLTLTQQQDS TIICTNQELD YYYRFYDVDE AAFDGNEVEL  60
VSRFSKVTRM DHFSSPCQPM WSPAQAAVDV VGSSETSRVR KKRFWDVLES CKQKVEAMEA  120
MDTPATAMFR VGAGDDGGGG GAGGGGGGAD GMRLVQLLVA CAEAVACRDR AQAAALLREL  180
QAGAPVHGTA FQRVASCFVQ GLADRLALAH PPALGPASMA FCIPPSSCAG RDGARGEALA  240
LAYELCPYLR FAHFVANACM LEAFEGESNV HVVDLGMTLG LDRGHQWRGL LDGLAARASG  300
KPARVRVTGV GARMDTMRAI KRELEAYAEG LGMYLEFRGI NRGLENLHID DLGVDADEAV  360
AINSVLELHS VVKESRGALN SVLQTIRKLS PRAFVLVEQD AGHNGPFFLG RFMEALHYYA  420
ALFDALDAAL PRYDARRARV EQFHFGAEIR NVVGCEGAAR VERHERADQW RRRMSRAGFQ  480
SVPIKMAAKA REWLDENAGG GGYTVAEEKG CLVLGWKGKP VIAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-5616152726378Protein SCARECROW
5b3h_A6e-5616152725377Protein SCARECROW
5b3h_D6e-5616152725377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646199.10.0DELLA protein RGL1
TrEMBLA0A0E0CBR30.0A0A0E0CBR3_9ORYZ; Uncharacterized protein
STRINGOMERI01G37320.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-59RGA-like 1