PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38050.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 463aa    MW: 50655.9 Da    PI: 7.6331
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.11.5e-10103155150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50 
                      k ien+ +r+ tf +Rr g+  K +   +LC++e+++i +++    g++ +++
  OMERI01G38050.1 103 KLIENEKKRKATFKNRRDGLKQKVSQFATLCGVEALLICVAPAvagGEVTTWP 155
                      569*************************************9854448888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.32595143IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-1595173IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-895156IPR002100Transcription factor, MADS-box
CDDcd002661.22E-1697175No hitNo description
PfamPF003199.9E-14105154IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVRTPTIIPL RPNYSPPGDG AAVRRDVFPF PTRRGAPSAS PRYQGKSFII TEILFPWVKD  60
LLLFALYLRC LHALMQRYSF VWFWISSGER RRDEMPRTKL VLKLIENEKK RKATFKNRRD  120
GLKQKVSQFA TLCGVEALLI CVAPAVAGGE VTTWPPDRAA VLDLIARLRA TPPEKIRQLH  180
NTQSLLRDEL DKQQRLLFKV QKCGADDVLT PWHCSLYDLS LDGLNALHDT LSETLDRAHR  240
RMAALGGGHG HGHVHGDAAS SSSAFSVPAP APHAVALPDN AFDFPFAPSN TGPVVGAHYF  300
YPLHDTLPLP LPQQVPGQPP PCIAYQMPPP PCLAYQMPPP PPPPSLAAVP FDQCMSGTGF  360
MDSNPYATHI MHGGSTAAGL FDDHGQIFSA GAGYDDDILG HGFAFAAGTG YDLEPRMTTA  420
DVWPTNTLNN IPNDGIGFQL QNDLKWMFPG GSNGSNLQGG FQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189111RRRDEMPRTKLVLKLIENEKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033800.0AP003380.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0497A05.
GenBankAP0065310.0AP006531.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1417F08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CBT80.0A0A0E0CBT8_9ORYZ; Uncharacterized protein
STRINGOMERI01G37480.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-13M-type_MADS family protein