PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38090.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1308aa    MW: 144526 Da    PI: 9.1771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001112141236323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       Cp   Cgk F ++ +L +H ++H
  OMERI01G38090.1 1214 CPvkGCGKKFFSHKYLLQHRKVH 1236
                       9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.2E-1574115IPR003349JmjN domain
PROSITE profilePS5118314.11875116IPR003349JmjN domain
PfamPF023751.6E-1376109IPR003349JmjN domain
SMARTSM005588.7E-23248389IPR003347JmjC domain
PROSITE profilePS5118427.496251389IPR003347JmjC domain
SuperFamilySSF511974.39E-13263386No hitNo description
PfamPF023735.1E-20281366IPR003347JmjC domain
SMARTSM003551711891211IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61212121241IPR007087Zinc finger, C2H2
SMARTSM003550.6212121236IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012141236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-612141240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-912281268No hitNo description
Gene3DG3DSA:3.30.160.601.5E-812411266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002912421266IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.32312421271IPR007087Zinc finger, C2H2
PROSITE patternPS00028012441266IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-712601294No hitNo description
Gene3DG3DSA:3.30.160.608.6E-912671295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1812721303IPR007087Zinc finger, C2H2
SMARTSM003551.712721298IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012741298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1308 aa     Download sequence    Send to blast
MPIRPLHFTP IPISSRSHQD QPNPCFSLKT SSFSPPNARA LRGGIPYSPP MRSSPPPAAP  60
AAEPVPPWLR SLPVAPEFRP TAAEFADPVA YILKIEPAAA PYGICKVVPP LPPPPKKATL  120
SNLSRSFAAL HPDDRSPSFP TRHQQVGLCP RRTRPGLKPV WRSSHRYTLP QFESKAGATR  180
KSLLAGLKVP ASRQLTPLDH EVLFWRASAD RPIVVEYGSD MSGSGFSPCA AQPQPQQQQQ  240
PTARAAAHLG ETAWNMRGVA RSPGSLLRFM PEDVPGVTTP MLYVGMMFSW FAWHVEDHDL  300
HSLNYMHLGA AKTWYGVPRD AALAFEEVVR EHGYGGEVNS LETFATLGQK TTVMSPEVLV  360
ESGFNCGEAS NIATPEWLRI AKEAAIRRAS INCPPMVSHY QLLYDLALSM RFREPSNGEM  420
ETRSSRIKEK KKCEGEQLVK KMFIQNVIED NELLSHLLND GSSCIILPAN AHDGPGLSTL  480
RSTNQSNMNS RISHNLCSRE EAPEASGCLL LNRNGDTRNC ISSDTHNMEG DKGDIMSATG  540
LLDQGLLSCV TCGILSFSCV AVLKPRDSTA RYLMSADSNS INNQLSISGG SILADAPTNE  600
RNGVISRPYS EHCCNEIMSD DAEIDKNSAL DLLAFAHGGQ SDPEEDPLEK ILKIAHGINK  660
SQPNSSNNVG CVGTKLSSSS TERQERPSSQ NAHCNGSSVI SNGPKGVRTR NKYQLKMVLS  720
EGFQAKDTYS AREKKVQSEP SSSKGAVKET VDVSGTENDV GCKSTTISVS EHRGSTKNMY  780
SVKEKKVQSK PSSLKGTVKE TVDVSGTEND VRCKSTTISV NEHRGSTPMT NSLAASIVKP  840
DKDSSRMHVF CLEHAIEVEK QLHAIGGSHI MLICRPEYPK IETEARLLGE EMGLVYDWKS  900
IHFKEANMED RQKIQEVLRD EEAIPTSSDW AVKLGINLYY SANLAKSPLY NKQMPYNRVI  960
YRAFGCDSPN DSPVKFNTCE RKQSHQKKIV VAGRWCGKVW MSKQVHPYLA HRVESQEAEE  1020
ADRICSYHFD EKHKAEPVGN SSRVEASKRK SSSLTGVTES SNRRGEIPGE ETNTKRPKHS  1080
QENNLRALET AAEVVVPSPA GTGLRISSRI ANRANKLKSK MEKEDVPSSR PKSNIKEKSS  1140
HASGQKSNVQ EANANSASHL RAMPPKQKAE AEAKKQIRTP KPPKQAVEYS CDIEGCSMSF  1200
RTKRDLSLHK SDICPVKGCG KKFFSHKYLL QHRKVHTDDR PLTCPWEGCN MAFKWPWART  1260
EHLRVHTGDR PYVCHEPGCA QTFRFVSDFS RHKRKTGHSV KKKKKAKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-601189130523139Lysine-specific demethylase REF6
6a58_A3e-601189130523139Lysine-specific demethylase REF6
6a59_A3e-601189130523139Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689520.0AK068952.1 Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621377.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0E0CBU50.0A0A0E0CBU5_9ORYZ; Uncharacterized protein
STRINGOMERI01G37520.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-162relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]