PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38240.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 253aa    MW: 27672 Da    PI: 4.27
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-06226249123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ C+k+F++++ L+ H +  H
  OMERI01G38240.1 226 YACKSCNKTFNTSMGLEAHSKAkH 249
                      89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.341226253IPR007087Zinc finger, C2H2
PROSITE patternPS000280228249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFVEV DGKRILLGTL  60
SVEHRDESDE EVPLAIPLFP NSDDDKIKEV QNSPSKFATL KSAAAASPTP EAIVEERKNY  120
GKSEADDDDS DEESDASGAD EYDDDEDMID KQDSSDDDDG DSSDEEETPS KNIKGNRHVE  180
TPLNTPQKRA RLATPIMDSK AGTGKRSGYA KKRTANNDMS EHSAGYACKS CNKTFNTSMG  240
LEAHSKAKHT ATK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411211e-168AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694821.15e-94PREDICTED: histone deacetylase HDT2-like
TrEMBLA0A0E0CBW80.0A0A0E0CBW8_9ORYZ; Uncharacterized protein
STRINGOMERI01G37660.21e-142(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-09histone deacetylase 2C