PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 315aa    MW: 35013.2 Da    PI: 6.2961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-06288311123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ C+k+F+++  Lk H +  H
  OMERI01G38270.1 288 YVCNSCKKTFNSSGALKDHSKAkH 311
                      9******************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-4288307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.032288315IPR007087Zinc finger, C2H2
SMARTSM003550.0031288311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280290311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MPDMITPWKK KAPRHPGVVI EPCNKKEIFC LEDTLYHLTS VALDEAYGLK DSNVKVFVEV  60
NDEKFAIGTL SSKRHLHIKV DFCFKKNFQL FHTSLISKVA FCGYQVKNLG KFTDSEGDES  120
DEEVPPGIRL YPKSDDNMIK EAQKTGKLPA KSAAVAFAMQ KAFVKEIEHY EKSKADDDNS  180
ERYSDSSVIG ESIGDEDSSD DADDEDEGES SDEETPAKNT KEENEPVVTP LKTFPHEMAK  240
IEAPIMDNKT GTNTSKRGSH LQVANPHPAK QAKRTPIKND TPKRSASYVC NSCKKTFNSS  300
GALKDHSKAK HPATN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284DTPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0999090.0AK099909.1 Oryza sativa Japonica Group cDNA clone:J013116D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616368.10.0histone deacetylase HDT2 isoform X1
RefseqXP_025878205.10.0histone deacetylase HDT2 isoform X1
TrEMBLA0A0E0CBX20.0A0A0E0CBX2_9ORYZ; Uncharacterized protein
STRINGORGLA01G0351900.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.17e-09histone deacetylase 2C